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Source: plasmidseeker
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13)
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/plasmidseeker
Vcs-Git: https://salsa.debian.org/med-team/plasmidseeker.git
Homepage: https://github.com/bioinfo-ut/PlasmidSeeker
Rules-Requires-Root: no
Package: plasmidseeker
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
genometester
Description: identification of known plasmids from whole-genome sequencing reads
PlasmidSeeker is a k-mer based program for the identification of known
plasmids from bacterial whole genome sequencing reads.
.
PlasmidSeeker that enables the detection of plasmids from bacterial WGS
data without read assembly. The PlasmidSeeker algorithm is based on
k-mers and uses k-mer abundance to distinguish between plasmid and
bacterial sequences. The performance of PlasmidSeeker was tested on a set
of simulated and real bacterial WGS samples, resulting in 100%
sensitivity and 99.98% specificity.
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