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#!/bin/sh
#/*****************************************************************************
# * *
# * PLAST : Parallel Local Alignment Search Tool *
# * Copyright (c) 2009-2015 Inria *
# * *
# * PLAST is free software; you can redistribute it and/or modify it under *
# * the Affero GPL v3 License *
# * *
# * This program is distributed in the hope that it will be useful, *
# * but WITHOUT ANY WARRANTY; without even the implied warranty of *
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
# * CECILL version 2 License for more details. *
# *****************************************************************************/
# We get the directory of the script (absolute path)
#_scripts_dir=$( cd -P -- "$(dirname -- "$(command -v -- "$0")")" && pwd -P )
BUILD_DIR=obj-$(dpkg-architecture -qDEB_HOST_GNU_TYPE)
DATA_DIR=$(pwd)/db
_script=`find $(pwd)/obj-x86_64-linux-gnu/bin -name plast -executable`
_result=`dirname $_script`/out.txt
echo "Start PLAST..."
echo
# We setup a PLAST command-line and run it to test the software
_cmdline="$_script -p plastp -i ${DATA_DIR}/query.fa -d ${DATA_DIR}/tursiops.fa -o $_result"
echo $_cmdline
eval $_cmdline
echo
echo " done!"
echo
echo "Read:" $_result
echo
echo
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