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#!/bin/sh -e
# http://dep.debian.net/deps/dep8/
# Autopkgtest: Test if plink run analysis correctly
# Author: Dylan Aïssi <bob.dybian@gmail.com>
# Last-Update: 2015-01-24
pkg=plink
if [ "$ADTTMP" = "" ] ; then
ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
fi
cd $ADTTMP
cp -a /usr/share/doc/${pkg}/examples/* $ADTTMP
PLINK_TEST='plink1 --noweb --file test'
# Allele frequencies
$PLINK_TEST --freq
diff plink.frq expected.plink.frq
# Case/control or QTL association
$PLINK_TEST --assoc
diff plink.assoc expected.plink.assoc
rm -f $ADTTMP/*
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