File: plink_rserve.h

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#ifndef __PLINK_RSERVE_H__
#define __PLINK_RSERVE_H__

// This file is part of PLINK 1.90, copyright (C) 2005-2017 Shaun Purcell,
// Christopher Chang.
//
// This program is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program.  If not, see <http://www.gnu.org/licenses/>.


int32_t rserve_call(char* rplugin_fname, uint32_t rplugin_port, uint32_t rplugin_debug, FILE* bedfile, uintptr_t bed_offset, uintptr_t marker_ct, uintptr_t unfiltered_marker_ct, uintptr_t* marker_exclude, uintptr_t* marker_reverse, char* marker_ids, uintptr_t max_marker_id_len, char** marker_allele_ptrs, uint32_t* marker_pos, uint32_t plink_maxsnp, Chrom_info* chrom_info_ptr, uintptr_t unfiltered_sample_ct, uintptr_t* pheno_nm, uint32_t pheno_nm_ct, uintptr_t* pheno_c, double* pheno_d, uint32_t cluster_ct, uint32_t* cluster_map, uint32_t* cluster_starts, uintptr_t covar_ct, double* covar_d, char* outname, char* outname_end);

#endif // __PLINK_RSERVE_H__