1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499
|
// This file is part of PLINK 1.90, copyright (C) 2005-2018 Shaun Purcell,
// Christopher Chang.
//
// This program is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program. If not, see <http://www.gnu.org/licenses/>.
// Rconnection.cc is part of a continuously updated package and uses
// C++-specific language constructs, so we omit this module when compiling with
// gcc instead of g++.
#if defined __cplusplus && !defined _WIN32
#define MAIN
#define SOCK_ERRORS
#include "sisocks.h"
#include "Rconnection.h"
#include "plink_common.h"
#include "plink_cluster.h"
#define RPLUGIN_BLOCK_SIZE 100
int32_t rserve_call(char* rplugin_fname, char* rplugin_host_or_socket, int32_t rplugin_port, uint32_t rplugin_debug, FILE* bedfile, uintptr_t bed_offset, uintptr_t marker_ct, uintptr_t unfiltered_marker_ct, uintptr_t* marker_exclude, uintptr_t* marker_reverse, char* marker_ids, uintptr_t max_marker_id_len, char** marker_allele_ptrs, uint32_t* marker_pos, uint32_t plink_maxsnp, Chrom_info* chrom_info_ptr, uintptr_t unfiltered_sample_ct, uintptr_t* pheno_nm, uint32_t pheno_nm_ct, uintptr_t* pheno_c, double* pheno_d, uint32_t cluster_ct, uint32_t* cluster_map, uint32_t* cluster_starts, uintptr_t covar_ct, double* covar_d, char* outname, char* outname_end) {
// See PLINK 1.07 r.cpp.
unsigned char* bigstack_mark = g_bigstack_base;
FILE* infile = nullptr;
FILE* outfile = nullptr;
int32_t* geno_int_buf = nullptr;
Rinteger* r_n = nullptr;
Rinteger* r_s = nullptr;
Rdouble* r_p = nullptr;
Rdouble* r_cov = nullptr;
Rconnection* rc = nullptr;
char* chrom_name_ptr = nullptr;
uintptr_t unfiltered_sample_ct4 = (unfiltered_sample_ct + 3) / 4;
uintptr_t unfiltered_sample_ctl2 = (unfiltered_sample_ct + (BITCT2 - 1)) / BITCT2;
uintptr_t pheno_nm_ctl2 = (pheno_nm_ct + (BITCT2 - 1)) / BITCT2;
uintptr_t line_idx = 0;
uintptr_t final_mask = get_final_mask(pheno_nm_ct);
uint32_t chrom_fo_idx = 0xffffffffU; // deliberate overflow
uint32_t chrom_end = 0;
uint32_t chrom_name_len = 0;
uint32_t pct = 0;
int32_t retval = 0;
char chrom_name_buf[3 + MAX_CHROM_TEXTNUM_SLEN];
uintptr_t marker_uidx;
uintptr_t marker_uidx_base;
uintptr_t ulii;
uintptr_t uljj;
uintptr_t* loadbuf_raw;
uintptr_t* loadbuf;
uintptr_t* ulptr;
Rinteger* r_l;
Rinteger* r_g;
Rdouble* r_data;
Rexp* r_eval_dummy; // bugfix (11 Sep 2018): must delete rc->eval return-val
double* pheno_d2;
double* covar_d2 = nullptr;
double* dptr;
char* inbuf_start;
char* inbuf_end;
char* bufptr;
int32_t* sample_to_cluster;
int32_t* iptr;
double dxx;
uint32_t marker_idx_base;
uint32_t block_size;
uint32_t block_offset;
uint32_t loop_end;
uint32_t sample_uidx;
uint32_t sample_idx;
uint32_t cur_data_len;
uint32_t uii;
int32_t ii;
if (!pheno_nm_ct) {
// bugfix (11 Sep 2018): this was segfaulting instead of printing an error
// message
logerrprint("Error: --R only processes samples with nonmissing phenotype values, and all\nphenotype values are missing.\n");
goto rserve_call_ret_1;
}
if (fopen_checked(rplugin_fname, "r", &infile)) {
goto rserve_call_ret_OPEN_FAIL;
}
if (bigstack_alloc_ul(unfiltered_sample_ctl2, &loadbuf_raw) ||
bigstack_alloc_ul(pheno_nm_ctl2 * RPLUGIN_BLOCK_SIZE, &loadbuf)) {
goto rserve_call_ret_NOMEM;
}
loadbuf_raw[unfiltered_sample_ctl2 - 1] = 0;
for (ulii = 1; ulii <= RPLUGIN_BLOCK_SIZE; ulii++) {
loadbuf[ulii * pheno_nm_ctl2 - 1] = 0;
}
inbuf_start = (char*)g_bigstack_base;
inbuf_end = inbuf_start;
while (1) {
if (((uintptr_t)g_bigstack_end) - ((uintptr_t)inbuf_start) < MAXLINELEN) {
goto rserve_call_ret_NOMEM;
}
inbuf_end[MAXLINELEN - 1] = ' ';
if (!fgets(inbuf_end, MAXLINELEN, infile)) {
break;
}
line_idx++;
if (!(inbuf_end[MAXLINELEN - 1])) {
sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --R file is pathologically long.\n", line_idx);
goto rserve_call_ret_INVALID_FORMAT_2;
}
uii = strlen(inbuf_end);
// standardize line ending
if (uii) {
if (inbuf_end[uii - 1] == '\n') {
if ((uii >= 2) && (inbuf_end[uii - 2] == '\r')) {
inbuf_end[uii - 2] = '\n';
inbuf_end = &(inbuf_end[uii - 1]);
} else {
inbuf_end = &(inbuf_end[uii]);
}
} else {
inbuf_end[uii] = '\n';
inbuf_end = &(inbuf_end[uii + 1]);
}
} else {
*inbuf_end++ = '\n';
}
}
if (fclose_null(&infile)) {
goto rserve_call_ret_READ_FAIL;
}
if (inbuf_end == inbuf_start) {
logerrprint("Error: Empty --R file.\n");
goto rserve_call_ret_INVALID_FORMAT;
}
*inbuf_end = '\0';
bigstack_alloc(1 + ((uintptr_t)(inbuf_end - inbuf_start)));
if (pheno_c) {
if (bigstack_alloc_d(pheno_nm_ct, &pheno_d2)) {
goto rserve_call_ret_NOMEM;
}
for (sample_uidx = 0, sample_idx = 0; sample_idx < pheno_nm_ct; sample_uidx++, sample_idx++) {
next_set_unsafe_ck(pheno_nm, &sample_uidx);
pheno_d2[sample_idx] = (double)((int32_t)(1 + is_set(pheno_c, sample_uidx)));
}
} else if (pheno_nm_ct != unfiltered_sample_ct) {
pheno_d2 = (double*)alloc_and_init_collapsed_arr_incl((char*)pheno_d, sizeof(double), unfiltered_sample_ct, pheno_nm, pheno_nm_ct, 1);
if (!pheno_d2) {
goto rserve_call_ret_NOMEM;
}
} else {
pheno_d2 = pheno_d;
}
if (covar_ct) {
if (pheno_nm_ct == unfiltered_sample_ct) {
covar_d2 = covar_d;
} else {
if (bigstack_alloc_d(pheno_nm_ct * covar_ct, &covar_d2)) {
goto rserve_call_ret_NOMEM;
}
for (sample_uidx = 0, sample_idx = 0; sample_idx < pheno_nm_ct; ++sample_uidx, ++sample_idx) {
next_set_unsafe_ck(pheno_nm, &sample_uidx);
memcpy(&(covar_d2[sample_idx * covar_ct]), &(covar_d[sample_uidx * covar_ct]), covar_ct * sizeof(double));
}
}
}
if (cluster_ct) {
if (bigstack_alloc_i(unfiltered_sample_ct, &sample_to_cluster)) {
goto rserve_call_ret_NOMEM;
}
fill_int_one(pheno_nm_ct, sample_to_cluster);
fill_unfiltered_sample_to_cluster(unfiltered_sample_ct, cluster_ct, cluster_map, cluster_starts, (uint32_t*)sample_to_cluster);
inplace_collapse_uint32_incl((uint32_t*)sample_to_cluster, unfiltered_sample_ct, pheno_nm, pheno_nm_ct);
bigstack_shrink_top(sample_to_cluster, pheno_nm_ct * sizeof(int32_t));
} else {
if (bigstack_calloc_i(pheno_nm_ct, &sample_to_cluster)) {
goto rserve_call_ret_NOMEM;
}
}
if (!rplugin_debug) {
if (bigstack_alloc_i(RPLUGIN_BLOCK_SIZE * ((uintptr_t)pheno_nm_ct), &geno_int_buf)) {
goto rserve_call_ret_NOMEM;
}
if (rplugin_port == -2) {
rplugin_port = 6311;
}
rc = new Rconnection(rplugin_host_or_socket, rplugin_port);
ii = rc->connect();
if (ii) {
sockerrorchecks(g_textbuf, 128, -1);
LOGERRPRINTFWW("Error: Unable to connect (code %d: %s).\n", ii, g_textbuf);
goto rserve_call_ret_NETWORK;
}
rc->eval("options(echo=F)");
r_s = new Rinteger(sample_to_cluster, pheno_nm_ct);
r_p = new Rdouble(pheno_d2, pheno_nm_ct);
r_n = new Rinteger((int32_t*)(&pheno_nm_ct), 1);
rc->assign("n", r_n);
rc->assign("PHENO", r_p);
rc->assign("CLUSTER", r_s);
r_eval_dummy = rc->eval("CLUSTER[CLUSTER==-1] <- NA");
if (r_eval_dummy) {
delete r_eval_dummy;
}
if (covar_ct) {
r_cov = new Rdouble(covar_d2, pheno_nm_ct * covar_ct);
rc->assign("c", r_cov);
r_eval_dummy = rc->eval("COVAR<-matrix(c,nrow=n,byrow=T)");
} else {
r_eval_dummy = rc->eval("COVAR<-NA");
}
if (r_eval_dummy) {
delete r_eval_dummy;
}
memcpy(outname_end, ".auto.R", 8);
} else {
memcpy(outname_end, ".debug.R", 9);
}
if (fopen_checked(outname, "w", &outfile)) {
goto rserve_call_ret_OPEN_FAIL;
}
LOGPRINTFWW5("--R%s: writing to %s ... ", rplugin_debug? " debug" : "", outname);
fputs("0%", stdout);
fflush(stdout);
loop_end = marker_ct / 100;
if (rplugin_debug) {
bufptr = memcpya(g_textbuf, "n <- ", 5);
bufptr = uint32toa(pheno_nm_ct, bufptr);
bufptr = memcpya(bufptr, "\nPHENO <- c( ", 13);
if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) {
goto rserve_call_ret_WRITE_FAIL;
}
for (sample_idx = 0; sample_idx < pheno_nm_ct - 1; sample_idx++) {
bufptr = dtoa_g(pheno_d2[sample_idx], g_textbuf);
bufptr = memcpya(bufptr, ", ", 2);
fwrite(g_textbuf, 1, (uintptr_t)(bufptr - g_textbuf), outfile);
}
bufptr = dtoa_g(pheno_d2[sample_idx], g_textbuf);
bufptr = memcpya(bufptr, " ) \n", 4);
if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) {
goto rserve_call_ret_WRITE_FAIL;
}
if (covar_ct) {
fputs("c <- c( ", outfile);
uljj = pheno_nm_ct * covar_ct - 1;
for (ulii = 0; ulii < uljj; ulii++) {
bufptr = dtoa_g(covar_d2[ulii], g_textbuf);
bufptr = memcpya(bufptr, ", ", 2);
fwrite(g_textbuf, 1, (uintptr_t)(bufptr - g_textbuf), outfile);
}
bufptr = dtoa_g(covar_d2[ulii], g_textbuf);
fwrite(g_textbuf, 1, (uintptr_t)(bufptr - g_textbuf), outfile);
fputs(" ) \nCOVAR <- matrix( c , nrow = n , byrow=T)\n", outfile);
} else {
// old code (this might be better? but --R backward compatibility is
// more important than --R-debug...):
// fputs("COVAR <- matrix( NA , nrow = n , ncol = 0 , byrow = T)\n", outfile);
fputs("COVAR<-NA\n", outfile);
}
fputs("CLUSTER <- c( ", outfile);
for (sample_idx = 0; sample_idx < pheno_nm_ct - 1; sample_idx++) {
bufptr = int32toa(sample_to_cluster[sample_idx], g_textbuf);
bufptr = memcpya(bufptr, ", ", 2);
fwrite(g_textbuf, 1, (uintptr_t)(bufptr - g_textbuf), outfile);
}
bufptr = int32toa(sample_to_cluster[sample_idx], g_textbuf);
bufptr = memcpya(bufptr, " ) \nCLUSTER[CLUSTER==-1] <- NA\n", 31);
if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) {
goto rserve_call_ret_WRITE_FAIL;
}
}
marker_uidx = next_unset_unsafe(marker_exclude, 0);
if (fseeko(bedfile, bed_offset + ((uint64_t)marker_uidx) * unfiltered_sample_ct4, SEEK_SET)) {
goto rserve_call_ret_READ_FAIL;
}
for (marker_idx_base = 0; marker_idx_base < marker_ct;) {
block_size = marker_ct - marker_idx_base;
if (block_size > RPLUGIN_BLOCK_SIZE) {
block_size = RPLUGIN_BLOCK_SIZE;
}
ulptr = loadbuf;
marker_uidx_base = marker_uidx;
for (block_offset = 0; block_offset < block_size; marker_uidx++, block_offset++) {
if (IS_SET(marker_exclude, marker_uidx)) {
marker_uidx = next_unset_ul_unsafe(marker_exclude, marker_uidx);
if (fseeko(bedfile, bed_offset + ((uint64_t)marker_uidx) * unfiltered_sample_ct4, SEEK_SET)) {
goto rserve_call_ret_READ_FAIL;
}
}
if (load_and_collapse_incl(unfiltered_sample_ct, pheno_nm_ct, pheno_nm, final_mask, IS_SET(marker_reverse, marker_uidx), bedfile, loadbuf_raw, ulptr)) {
goto rserve_call_ret_READ_FAIL;
}
// 0 -> 3
// 1 -> 0
// 2 -> 2
// 3 -> 1
// i.e.
// bottom bit unset -> top bit set
// top bit same as bottom bit -> bottom bit set
for (uii = 0; uii < pheno_nm_ctl2; uii++) {
ulii = *ulptr;
uljj = (~ulii) & FIVEMASK;
ulii = (ulii >> 1) & FIVEMASK;
*ulptr++ = (uljj << 1) | (ulii ^ uljj);
}
// overflow bits on last word don't matter
}
if (!rplugin_debug) {
// transpose, subtract 1
iptr = geno_int_buf;
for (sample_idx = 0; sample_idx < pheno_nm_ct; sample_idx++) {
ulptr = &(loadbuf[sample_idx / BITCT2]);
uii = 2 * (sample_idx & (BITCT2 - 1));
for (block_offset = 0; block_offset < block_size; block_offset++, ulptr = &(ulptr[pheno_nm_ctl2])) {
ulii = ((*ulptr) >> uii) & 3;
*iptr++ = ((int32_t)((uint32_t)ulii)) - 1;
}
}
r_l = new Rinteger((int32_t*)(&block_size), 1);
r_g = new Rinteger(geno_int_buf, block_size * pheno_nm_ct);
rc->assign("l", r_l);
rc->assign("g", r_g);
r_eval_dummy = rc->eval("GENO<-matrix(g,nrow=n,byrow=T)");
if (r_eval_dummy) {
delete r_eval_dummy;
}
r_eval_dummy = rc->eval("GENO[GENO==-1] <- NA");
if (r_eval_dummy) {
delete r_eval_dummy;
}
delete r_l;
delete r_g;
r_eval_dummy = rc->eval(inbuf_start);
if (r_eval_dummy) {
delete r_eval_dummy;
}
r_data = (Rdouble*)rc->eval("Rplink(PHENO,GENO,CLUSTER,COVAR)");
if (r_data) {
dptr = r_data->doubleArray();
for (marker_uidx = marker_uidx_base, block_offset = 0; block_offset < block_size; marker_uidx++, block_offset++) {
next_unset_ul_unsafe_ck(marker_exclude, &marker_uidx);
if (marker_uidx >= chrom_end) {
do {
chrom_end = chrom_info_ptr->chrom_fo_vidx_start[(++chrom_fo_idx) + 1];
} while (marker_uidx >= chrom_end);
uii = chrom_info_ptr->chrom_file_order[chrom_fo_idx];
chrom_name_ptr = chrom_name_buf5w4write(chrom_info_ptr, uii, &chrom_name_len, chrom_name_buf);
}
bufptr = memcpyax(g_textbuf, chrom_name_ptr, chrom_name_len, ' ');
bufptr = fw_strcpy(plink_maxsnp, &(marker_ids[marker_uidx * max_marker_id_len]), bufptr);
*bufptr++ = ' ';
bufptr = uint32toa_w10x(marker_pos[marker_uidx], ' ', bufptr);
if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) {
goto rserve_call_ret_WRITE_FAIL;
}
fputs_w4(marker_allele_ptrs[2 * marker_uidx], outfile);
g_textbuf[0] = ' ';
bufptr = &(g_textbuf[1]);
cur_data_len = (int32_t)(*dptr++);
for (uii = 0; uii < cur_data_len; uii++) {
dxx = *dptr++;
if (realnum(dxx)) {
bufptr = dtoa_g(dxx, bufptr);
} else {
bufptr = memcpya(bufptr, "NA", 2);
}
*bufptr++ = '\t';
if (bufptr > &(g_textbuf[MAXLINELEN])) {
if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) {
goto rserve_call_ret_WRITE_FAIL;
}
bufptr = g_textbuf;
}
}
*bufptr++ = '\n';
if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) {
goto rserve_call_ret_WRITE_FAIL;
}
}
delete r_data;
} else {
for (marker_uidx = marker_uidx_base, block_offset = 0; block_offset < block_size; marker_uidx++, block_offset++) {
next_unset_ul_unsafe_ck(marker_exclude, &marker_uidx);
if (marker_uidx >= chrom_end) {
do {
chrom_end = chrom_info_ptr->chrom_fo_vidx_start[(++chrom_fo_idx) + 1];
} while (marker_uidx >= chrom_end);
uii = chrom_info_ptr->chrom_file_order[chrom_fo_idx];
chrom_name_ptr = chrom_name_buf5w4write(chrom_info_ptr, uii, &chrom_name_len, chrom_name_buf);
}
bufptr = memcpyax(g_textbuf, chrom_name_ptr, chrom_name_len, ' ');
bufptr = fw_strcpy(plink_maxsnp, &(marker_ids[marker_uidx * max_marker_id_len]), bufptr);
*bufptr++ = ' ';
bufptr = uint32toa_w10x(marker_pos[marker_uidx], ' ', bufptr);
if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) {
goto rserve_call_ret_WRITE_FAIL;
}
fputs_w4(marker_allele_ptrs[2 * marker_uidx], outfile);
fputs(" NA\n", outfile);
}
}
} else {
bufptr = memcpya(g_textbuf, "l <- ", 5);
bufptr = uint32toa(block_size, bufptr);
bufptr = memcpya(bufptr, "\ng <- c( ", 9);
if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) {
goto rserve_call_ret_WRITE_FAIL;
}
sample_idx = 0;
while (1) {
bufptr = g_textbuf;
ulptr = &(loadbuf[sample_idx / BITCT2]);
uii = 2 * (sample_idx & (BITCT2 - 1));
for (block_offset = 0; block_offset < block_size; block_offset++, ulptr = &(ulptr[pheno_nm_ctl2])) {
ulii = ((*ulptr) >> uii) & 3;
if (!ulii) {
bufptr = memcpya(bufptr, "-1", 2);
} else {
// '/' = ascii 47
*bufptr++ = (unsigned char)(47 + ulii);
}
bufptr = memcpya(bufptr, ", ", 2);
}
if (++sample_idx == pheno_nm_ct) {
break;
}
if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) {
goto rserve_call_ret_WRITE_FAIL;
}
}
bufptr = memcpya(&(bufptr[-2]), " ) \nGENO <- matrix( g , nrow = n ,byrow=T)\nGENO[GENO == -1 ] <- NA \n\n\n", 70);
if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) {
goto rserve_call_ret_WRITE_FAIL;
}
if (fwrite_checked(inbuf_start, inbuf_end - inbuf_start, outfile)) {
goto rserve_call_ret_WRITE_FAIL;
}
putc_unlocked('\n', outfile);
}
marker_idx_base += block_size;
if (marker_idx_base >= loop_end) {
if (marker_idx_base < marker_ct) {
if (pct >= 10) {
putc_unlocked('\b', stdout);
}
pct = (marker_idx_base * 100LLU) / marker_ct;
printf("\b\b%u%%", pct);
fflush(stdout);
loop_end = (((uint64_t)pct + 1LLU) * marker_ct) / 100;
}
}
}
if (pct >= 10) {
putc_unlocked('\b', stdout);
}
fputs("\b\b", stdout);
logprint("done.\n");
while (0) {
rserve_call_ret_NOMEM:
retval = RET_NOMEM;
break;
rserve_call_ret_OPEN_FAIL:
retval = RET_OPEN_FAIL;
break;
rserve_call_ret_READ_FAIL:
retval = RET_READ_FAIL;
break;
rserve_call_ret_WRITE_FAIL:
retval = RET_WRITE_FAIL;
break;
rserve_call_ret_INVALID_FORMAT_2:
logerrprintb();
rserve_call_ret_INVALID_FORMAT:
retval = RET_INVALID_FORMAT;
break;
rserve_call_ret_NETWORK:
retval = RET_NETWORK;
break;
}
rserve_call_ret_1:
fclose_cond(infile);
fclose_cond(outfile);
bigstack_reset(bigstack_mark);
delete r_n;
delete r_p;
delete r_s;
delete r_cov;
return retval;
}
#endif // __cplusplus, !_WIN32
|