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#include "database-builder.h"
#include "dprintf.h"
#include "turbopfor-encode.h"
#include <algorithm>
#include <assert.h>
#ifdef HAS_ENDIAN_H
#include <endian.h>
#endif
#include <fcntl.h>
#include <string.h>
#include <string_view>
#include <sys/stat.h>
#include <sys/time.h>
#include <sys/types.h>
#include <unistd.h>
#include <zdict.h>
#include <zstd.h>
#define P4NENC_BOUND(n) ((n + 127) / 128 + (n + 32) * sizeof(uint32_t))
#define NUM_TRIGRAMS 16777216
using namespace std;
using namespace std::chrono;
constexpr unsigned num_overflow_slots = 16;
string zstd_compress(const string &src, ZSTD_CDict *cdict, string *tempbuf);
class PostingListBuilder {
public:
inline void add_docid(uint32_t docid);
inline void add_first_docid(uint32_t docid);
void finish();
vector<unsigned char> encoded;
size_t get_num_docids() const {
// Updated only when we flush, so check that we're finished.
assert(pending_deltas.empty());
return num_docids;
}
private:
void write_header(uint32_t docid);
void append_block();
vector<uint32_t> pending_deltas;
uint32_t num_docids = 0; // Should be size_t, except the format only supports 2^32 docids per posting list anyway.
uint32_t last_docid = -1;
};
void PostingListBuilder::add_docid(uint32_t docid)
{
// Deduplicate against the last inserted value, if any.
if (docid == last_docid) {
return;
}
pending_deltas.push_back(docid - last_docid - 1);
last_docid = docid;
if (pending_deltas.size() == 128) {
append_block();
pending_deltas.clear();
num_docids += 128;
}
}
void PostingListBuilder::add_first_docid(uint32_t docid)
{
write_header(docid);
++num_docids;
last_docid = docid;
}
void PostingListBuilder::finish()
{
if (pending_deltas.empty()) {
return;
}
assert(!encoded.empty()); // write_header() should already have run.
// No interleaving for partial blocks.
unsigned char buf[P4NENC_BOUND(128)];
unsigned char *end = encode_pfor_single_block<128>(pending_deltas.data(), pending_deltas.size(), /*interleaved=*/false, buf);
encoded.insert(encoded.end(), buf, end);
num_docids += pending_deltas.size();
pending_deltas.clear();
}
void PostingListBuilder::append_block()
{
unsigned char buf[P4NENC_BOUND(128)];
assert(pending_deltas.size() == 128);
unsigned char *end = encode_pfor_single_block<128>(pending_deltas.data(), 128, /*interleaved=*/true, buf);
encoded.insert(encoded.end(), buf, end);
}
void PostingListBuilder::write_header(uint32_t docid)
{
unsigned char buf[P4NENC_BOUND(1)];
unsigned char *end = write_baseval(docid, buf);
encoded.insert(encoded.end(), buf, end);
}
void DictionaryBuilder::add_file(string filename, dir_time)
{
if (keep_current_block) { // Only bother saving the filenames if we're actually keeping the block.
if (!current_block.empty()) {
current_block.push_back('\0');
}
current_block += filename;
}
if (++num_files_in_block == block_size) {
flush_block();
}
}
void DictionaryBuilder::flush_block()
{
if (keep_current_block) {
if (slot_for_current_block == -1) {
lengths.push_back(current_block.size());
sampled_blocks.push_back(move(current_block));
} else {
lengths[slot_for_current_block] = current_block.size();
sampled_blocks[slot_for_current_block] = move(current_block);
}
}
current_block.clear();
num_files_in_block = 0;
++block_num;
if (block_num < blocks_to_keep) {
keep_current_block = true;
slot_for_current_block = -1;
} else {
// Keep every block with equal probability (reservoir sampling).
uint64_t idx = uniform_int_distribution<uint64_t>(0, block_num)(reservoir_rand);
keep_current_block = (idx < blocks_to_keep);
slot_for_current_block = idx;
}
}
string DictionaryBuilder::train(size_t buf_size)
{
string dictionary_buf;
sort(sampled_blocks.begin(), sampled_blocks.end()); // Seemingly important for decompression speed.
for (const string &block : sampled_blocks) {
dictionary_buf += block;
}
string buf;
buf.resize(buf_size);
size_t ret = ZDICT_trainFromBuffer(&buf[0], buf_size, dictionary_buf.data(), lengths.data(), lengths.size());
if (ZDICT_isError(ret)) {
return "";
}
dprintf("Sampled %zu bytes in %zu blocks, built a dictionary of size %zu\n", dictionary_buf.size(), lengths.size(), ret);
buf.resize(ret);
sampled_blocks.clear();
lengths.clear();
return buf;
}
class EncodingCorpus : public DatabaseReceiver {
public:
EncodingCorpus(FILE *outfp, size_t block_size, ZSTD_CDict *cdict, bool store_dir_times);
~EncodingCorpus();
void add_file(std::string filename, dir_time dt) override;
void flush_block() override;
void finish() override;
std::vector<uint64_t> filename_blocks;
size_t num_files = 0, num_files_in_block = 0, num_blocks = 0;
bool seen_trigram(uint32_t trgm)
{
return invindex[trgm] != nullptr;
}
size_t num_files_seen() const override { return num_files; }
PostingListBuilder &get_pl_builder(uint32_t trgm)
{
return *invindex[trgm];
}
void add_docid(uint32_t trgm, uint32_t docid)
{
if (invindex[trgm] == nullptr) {
invindex[trgm] = new PostingListBuilder;
invindex[trgm]->add_first_docid(docid);
} else {
invindex[trgm]->add_docid(docid);
}
}
size_t num_trigrams() const;
std::string get_compressed_dir_times();
private:
void compress_dir_times(size_t allowed_slop);
std::unique_ptr<PostingListBuilder *[]> invindex;
FILE *outfp;
off_t outfp_pos; // Cheaper than calling ftell(outfp) all the time.
std::string current_block;
std::string tempbuf;
const size_t block_size;
const bool store_dir_times;
ZSTD_CDict *cdict;
ZSTD_CStream *dir_time_ctx = nullptr;
std::string dir_times; // Buffer of still-uncompressed data.
std::string dir_times_compressed;
};
EncodingCorpus::EncodingCorpus(FILE *outfp, size_t block_size, ZSTD_CDict *cdict, bool store_dir_times)
: invindex(new PostingListBuilder *[NUM_TRIGRAMS]), outfp(outfp), outfp_pos(ftell(outfp)), block_size(block_size), store_dir_times(store_dir_times), cdict(cdict)
{
fill(invindex.get(), invindex.get() + NUM_TRIGRAMS, nullptr);
if (store_dir_times) {
dir_time_ctx = ZSTD_createCStream();
ZSTD_initCStream(dir_time_ctx, /*level=*/6);
}
}
EncodingCorpus::~EncodingCorpus()
{
for (unsigned i = 0; i < NUM_TRIGRAMS; ++i) {
delete invindex[i];
}
}
void EncodingCorpus::add_file(string filename, dir_time dt)
{
++num_files;
if (!current_block.empty()) {
current_block.push_back('\0');
}
current_block += filename;
if (++num_files_in_block == block_size) {
flush_block();
}
if (store_dir_times) {
if (dt.sec == -1) {
// Not a directory.
dir_times.push_back('\0');
} else {
dir_times.push_back('\1');
dir_times.append(reinterpret_cast<char *>(&dt.sec), sizeof(dt.sec));
dir_times.append(reinterpret_cast<char *>(&dt.nsec), sizeof(dt.nsec));
}
compress_dir_times(/*allowed_slop=*/4096);
}
}
void EncodingCorpus::compress_dir_times(size_t allowed_slop)
{
while (dir_times.size() >= allowed_slop) {
size_t old_size = dir_times_compressed.size();
dir_times_compressed.resize(old_size + 4096);
ZSTD_outBuffer outbuf;
outbuf.dst = dir_times_compressed.data() + old_size;
outbuf.size = 4096;
outbuf.pos = 0;
ZSTD_inBuffer inbuf;
inbuf.src = dir_times.data();
inbuf.size = dir_times.size();
inbuf.pos = 0;
int ret = ZSTD_compressStream(dir_time_ctx, &outbuf, &inbuf);
if (ret < 0) {
fprintf(stderr, "ZSTD_compressStream() failed\n");
exit(1);
}
dir_times_compressed.resize(old_size + outbuf.pos);
dir_times.erase(dir_times.begin(), dir_times.begin() + inbuf.pos);
if (outbuf.pos == 0 && inbuf.pos == 0) {
// Nothing happened (not enough data?), try again later.
return;
}
}
}
void EncodingCorpus::flush_block()
{
if (current_block.empty()) {
return;
}
uint32_t docid = num_blocks;
// Create trigrams.
const char *ptr = current_block.c_str();
const char *end = ptr + current_block.size();
while (ptr < end - 3) { // Must be at least one filename left, that's at least three bytes.
if (ptr[0] == '\0') {
// This filename is zero bytes, so skip it (and the zero terminator).
++ptr;
continue;
} else if (ptr[1] == '\0') {
// This filename is one byte, so skip it (and the zero terminator).
ptr += 2;
continue;
} else if (ptr[2] == '\0') {
// This filename is two bytes, so skip it (and the zero terminator).
ptr += 3;
continue;
}
for ( ;; ) {
// NOTE: Will read one byte past the end of the trigram, but it's OK,
// since we always call it from contexts where there's a terminating zero byte.
uint32_t trgm;
memcpy(&trgm, ptr, sizeof(trgm));
++ptr;
trgm = le32toh(trgm);
add_docid(trgm & 0xffffff, docid);
if (trgm <= 0xffffff) {
// Terminating zero byte, so we're done with this filename.
// Skip the remaining two bytes, and the zero terminator.
ptr += 3;
break;
}
}
}
// Compress and add the filename block.
filename_blocks.push_back(outfp_pos);
string compressed = zstd_compress(current_block, cdict, &tempbuf);
if (fwrite(compressed.data(), compressed.size(), 1, outfp) != 1) {
perror("fwrite()");
exit(1);
}
outfp_pos += compressed.size();
current_block.clear();
num_files_in_block = 0;
++num_blocks;
}
void EncodingCorpus::finish()
{
flush_block();
}
size_t EncodingCorpus::num_trigrams() const
{
size_t num = 0;
for (unsigned trgm = 0; trgm < NUM_TRIGRAMS; ++trgm) {
if (invindex[trgm] != nullptr) {
++num;
}
}
return num;
}
string EncodingCorpus::get_compressed_dir_times()
{
if (!store_dir_times) {
return "";
}
compress_dir_times(/*allowed_slop=*/0);
assert(dir_times.empty());
for (;;) {
size_t old_size = dir_times_compressed.size();
dir_times_compressed.resize(old_size + 4096);
ZSTD_outBuffer outbuf;
outbuf.dst = dir_times_compressed.data() + old_size;
outbuf.size = 4096;
outbuf.pos = 0;
int ret = ZSTD_endStream(dir_time_ctx, &outbuf);
if (ret < 0) {
fprintf(stderr, "ZSTD_compressStream() failed\n");
exit(1);
}
dir_times_compressed.resize(old_size + outbuf.pos);
if (ret == 0) {
// All done.
break;
}
}
return dir_times_compressed;
}
string zstd_compress(const string &src, ZSTD_CDict *cdict, string *tempbuf)
{
static ZSTD_CCtx *ctx = nullptr;
if (ctx == nullptr) {
ctx = ZSTD_createCCtx();
}
size_t max_size = ZSTD_compressBound(src.size());
if (tempbuf->size() < max_size) {
tempbuf->resize(max_size);
}
size_t size;
if (cdict == nullptr) {
size = ZSTD_compressCCtx(ctx, &(*tempbuf)[0], max_size, src.data(), src.size(), /*level=*/6);
} else {
size = ZSTD_compress_usingCDict(ctx, &(*tempbuf)[0], max_size, src.data(), src.size(), cdict);
}
return string(tempbuf->data(), size);
}
bool is_prime(uint32_t x)
{
if ((x % 2) == 0 || (x % 3) == 0) {
return false;
}
uint32_t limit = ceil(sqrt(x));
for (uint32_t factor = 5; factor <= limit; ++factor) {
if ((x % factor) == 0) {
return false;
}
}
return true;
}
uint32_t next_prime(uint32_t x)
{
if ((x % 2) == 0) {
++x;
}
while (!is_prime(x)) {
x += 2;
}
return x;
}
unique_ptr<Trigram[]> create_hashtable(EncodingCorpus &corpus, const vector<uint32_t> &all_trigrams, uint32_t ht_size, uint32_t num_overflow_slots)
{
unique_ptr<Trigram[]> ht(new Trigram[ht_size + num_overflow_slots + 1]); // 1 for the sentinel element at the end.
for (unsigned i = 0; i < ht_size + num_overflow_slots + 1; ++i) {
ht[i].trgm = uint32_t(-1);
ht[i].num_docids = 0;
ht[i].offset = 0;
}
for (uint32_t trgm : all_trigrams) {
// We don't know offset yet, so set it to zero.
Trigram to_insert{ trgm, uint32_t(corpus.get_pl_builder(trgm).get_num_docids()), 0 };
uint32_t bucket = hash_trigram(trgm, ht_size);
unsigned distance = 0;
while (ht[bucket].num_docids != 0) {
// Robin Hood hashing; reduces the longest distance by a lot.
unsigned other_distance = bucket - hash_trigram(ht[bucket].trgm, ht_size);
if (distance > other_distance) {
swap(to_insert, ht[bucket]);
distance = other_distance;
}
++bucket, ++distance;
if (distance > num_overflow_slots) {
return nullptr;
}
}
ht[bucket] = to_insert;
}
return ht;
}
DatabaseBuilder::DatabaseBuilder(const char *outfile, gid_t owner, int block_size, string dictionary, bool check_visibility)
: outfile(outfile), block_size(block_size)
{
umask(0027);
string path = outfile;
path.resize(path.find_last_of('/') + 1);
if (path.empty()) {
path = ".";
}
int fd = -1;
#ifdef O_TMPFILE
fd = open(path.c_str(), O_WRONLY | O_TMPFILE, 0640);
if (fd == -1 && errno != EOPNOTSUPP) {
perror(path.c_str());
exit(1);
}
#endif
if (fd == -1) {
temp_filename = string(outfile) + ".XXXXXX";
fd = mkstemp(&temp_filename[0]);
if (fd == -1) {
perror(temp_filename.c_str());
exit(1);
}
if (fchmod(fd, 0640) == -1) {
perror("fchmod");
exit(1);
}
}
if (owner != (gid_t)-1) {
if (fchown(fd, (uid_t)-1, owner) == -1) {
perror("fchown");
exit(1);
}
}
outfp = fdopen(fd, "wb");
if (outfp == nullptr) {
perror(outfile);
exit(1);
}
// Write the header.
memcpy(hdr.magic, "\0plocate", 8);
hdr.version = -1; // Mark as broken.
hdr.hashtable_size = 0; // Not known yet.
hdr.extra_ht_slots = num_overflow_slots;
hdr.num_docids = 0;
hdr.hash_table_offset_bytes = -1; // We don't know these offsets yet.
hdr.max_version = 2;
hdr.filename_index_offset_bytes = -1;
hdr.zstd_dictionary_length_bytes = -1;
hdr.check_visibility = check_visibility;
fwrite(&hdr, sizeof(hdr), 1, outfp);
if (dictionary.empty()) {
hdr.zstd_dictionary_offset_bytes = 0;
hdr.zstd_dictionary_length_bytes = 0;
} else {
hdr.zstd_dictionary_offset_bytes = ftell(outfp);
fwrite(dictionary.data(), dictionary.size(), 1, outfp);
hdr.zstd_dictionary_length_bytes = dictionary.size();
cdict = ZSTD_createCDict(dictionary.data(), dictionary.size(), /*level=*/6);
}
hdr.directory_data_length_bytes = 0;
hdr.directory_data_offset_bytes = 0;
hdr.next_zstd_dictionary_length_bytes = 0;
hdr.next_zstd_dictionary_offset_bytes = 0;
hdr.conf_block_length_bytes = 0;
hdr.conf_block_offset_bytes = 0;
}
DatabaseReceiver *DatabaseBuilder::start_corpus(bool store_dir_times)
{
corpus_start = steady_clock::now();
corpus = new EncodingCorpus(outfp, block_size, cdict, store_dir_times);
return corpus;
}
void DatabaseBuilder::set_next_dictionary(std::string next_dictionary)
{
this->next_dictionary = move(next_dictionary);
}
void DatabaseBuilder::set_conf_block(std::string conf_block)
{
this->conf_block = move(conf_block);
}
void DatabaseBuilder::finish_corpus()
{
corpus->finish();
hdr.num_docids = corpus->filename_blocks.size();
// Stick an empty block at the end as sentinel.
corpus->filename_blocks.push_back(ftell(outfp));
const size_t bytes_for_filenames = corpus->filename_blocks.back() - corpus->filename_blocks.front();
// Write the offsets to the filenames.
hdr.filename_index_offset_bytes = ftell(outfp);
const size_t bytes_for_filename_index = corpus->filename_blocks.size() * sizeof(uint64_t);
fwrite(corpus->filename_blocks.data(), corpus->filename_blocks.size(), sizeof(uint64_t), outfp);
corpus->filename_blocks.clear();
corpus->filename_blocks.shrink_to_fit();
// Finish up encoding the posting lists.
size_t trigrams = 0, longest_posting_list = 0;
size_t bytes_for_posting_lists = 0;
for (unsigned trgm = 0; trgm < NUM_TRIGRAMS; ++trgm) {
if (!corpus->seen_trigram(trgm))
continue;
PostingListBuilder &pl_builder = corpus->get_pl_builder(trgm);
pl_builder.finish();
longest_posting_list = max(longest_posting_list, pl_builder.get_num_docids());
trigrams += pl_builder.get_num_docids();
bytes_for_posting_lists += pl_builder.encoded.size();
}
size_t num_trigrams = corpus->num_trigrams();
dprintf("%zu files, %zu different trigrams, %zu entries, avg len %.2f, longest %zu\n",
corpus->num_files, num_trigrams, trigrams, double(trigrams) / num_trigrams, longest_posting_list);
dprintf("%zu bytes used for posting lists (%.2f bits/entry)\n", bytes_for_posting_lists, 8 * bytes_for_posting_lists / double(trigrams));
dprintf("Building posting lists took %.1f ms.\n\n", 1e3 * duration<float>(steady_clock::now() - corpus_start).count());
// Find the used trigrams.
vector<uint32_t> all_trigrams;
for (unsigned trgm = 0; trgm < NUM_TRIGRAMS; ++trgm) {
if (corpus->seen_trigram(trgm)) {
all_trigrams.push_back(trgm);
}
}
// Create the hash table.
unique_ptr<Trigram[]> hashtable;
uint32_t ht_size = next_prime(all_trigrams.size());
for (;;) {
hashtable = create_hashtable(*corpus, all_trigrams, ht_size, num_overflow_slots);
if (hashtable == nullptr) {
dprintf("Failed creating hash table of size %u, increasing by 5%% and trying again.\n", ht_size);
ht_size = next_prime(ht_size * 1.05);
} else {
dprintf("Created hash table of size %u.\n\n", ht_size);
break;
}
}
// Find the offsets for each posting list.
size_t bytes_for_hashtable = (ht_size + num_overflow_slots + 1) * sizeof(Trigram);
uint64_t offset = ftell(outfp) + bytes_for_hashtable;
for (unsigned i = 0; i < ht_size + num_overflow_slots + 1; ++i) {
hashtable[i].offset = offset; // Needs to be there even for empty slots.
if (hashtable[i].num_docids == 0) {
continue;
}
const vector<unsigned char> &encoded = corpus->get_pl_builder(hashtable[i].trgm).encoded;
offset += encoded.size();
}
// Write the hash table.
hdr.hash_table_offset_bytes = ftell(outfp);
hdr.hashtable_size = ht_size;
fwrite(hashtable.get(), ht_size + num_overflow_slots + 1, sizeof(Trigram), outfp);
// Write the actual posting lists.
for (unsigned i = 0; i < ht_size + num_overflow_slots + 1; ++i) {
if (hashtable[i].num_docids == 0) {
continue;
}
const vector<unsigned char> &encoded = corpus->get_pl_builder(hashtable[i].trgm).encoded;
fwrite(encoded.data(), encoded.size(), 1, outfp);
}
// Finally, write the directory times (for updatedb).
string compressed_dir_times = corpus->get_compressed_dir_times();
size_t bytes_for_compressed_dir_times = 0;
if (!compressed_dir_times.empty()) {
hdr.directory_data_offset_bytes = ftell(outfp);
hdr.directory_data_length_bytes = compressed_dir_times.size();
fwrite(compressed_dir_times.data(), compressed_dir_times.size(), 1, outfp);
bytes_for_compressed_dir_times = compressed_dir_times.size();
compressed_dir_times.clear();
}
// Write the recommended dictionary for next update.
if (!next_dictionary.empty()) {
hdr.next_zstd_dictionary_offset_bytes = ftell(outfp);
hdr.next_zstd_dictionary_length_bytes = next_dictionary.size();
fwrite(next_dictionary.data(), next_dictionary.size(), 1, outfp);
}
// And the configuration block.
if (!conf_block.empty()) {
hdr.conf_block_offset_bytes = ftell(outfp);
hdr.conf_block_length_bytes = conf_block.size();
fwrite(conf_block.data(), conf_block.size(), 1, outfp);
}
// Rewind, and write the updated header.
hdr.version = 1;
fseek(outfp, 0, SEEK_SET);
fwrite(&hdr, sizeof(hdr), 1, outfp);
if (!temp_filename.empty()) {
if (rename(temp_filename.c_str(), outfile.c_str()) == -1) {
perror("rename");
exit(1);
}
} else {
#ifdef O_TMPFILE
// Give the file a proper name, making it visible in the file system.
// TODO: It would be nice to be able to do this atomically, like with rename.
unlink(outfile.c_str());
char procpath[256];
snprintf(procpath, sizeof(procpath), "/proc/self/fd/%d", fileno(outfp));
if (linkat(AT_FDCWD, procpath, AT_FDCWD, outfile.c_str(), AT_SYMLINK_FOLLOW) == -1) {
perror("linkat");
exit(1);
}
#endif
}
fclose(outfp);
size_t total_bytes = (bytes_for_hashtable + bytes_for_posting_lists + bytes_for_filename_index + bytes_for_filenames + bytes_for_compressed_dir_times);
dprintf("Block size: %7d files\n", block_size);
dprintf("Dictionary: %'7.1f MB\n", hdr.zstd_dictionary_length_bytes / 1048576.0);
dprintf("Hash table: %'7.1f MB\n", bytes_for_hashtable / 1048576.0);
dprintf("Posting lists: %'7.1f MB\n", bytes_for_posting_lists / 1048576.0);
dprintf("Filename index: %'7.1f MB\n", bytes_for_filename_index / 1048576.0);
dprintf("Filenames: %'7.1f MB\n", bytes_for_filenames / 1048576.0);
if (bytes_for_compressed_dir_times != 0) {
dprintf("Modify times: %'7.1f MB\n", bytes_for_compressed_dir_times / 1048576.0);
}
dprintf("Total: %'7.1f MB\n", total_bytes / 1048576.0);
dprintf("\n");
}
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