1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
|
// HEATMAP prefab
//
//
#setifnotgiven xcats = ""
#setifnotgiven ycats = ""
#setifnotgiven xbinsize = ""
#setifnotgiven ybinsize = ""
#setifnotgiven cutofflist = ""
#setifnotgiven colorlist = "yellow,dullyellow,orange,red,lightpurple,purple"
#setifnotgiven zerocolor = black
#setifnotgiven contentfield = ""
#setifnotgiven symbol = ""
#setifnotgiven outline = ""
#include $chunk_setstd
#if @xcats != ""
#set xbinsize = 1
#endif
#if @ycats != ""
#set ybinsize = 1
#endif
#if @xbinsize = ""
#set figure_x = 1
#endif
#if @ybinsize = ""
#set figure_y = 1
#endif
#if @cutofflist = ""
#set autocuts = 1
// set cutofflist just for first stab..
#set cutofflist = 50,25,15,10,5,1
#endif
// read data 1st time to get bin sizes..
#if @figure_x = 1 || @figure_y = 1 || @contentfield != ""
#include $chunk_read
// get range of content field..
#if @contentfield != ""
#include $chunk_area
xautorange: datafield=@contentfield
yrange: 0 10
#endproc
#set RANGEMAX = @XMAX
#endif
#include $chunk_area
#if @figure_x = 1
xautorange: datafield=@x
#else
xrange: 0 10
#endif
#if @figure_y = 1
yautorange: datafield=@y
#else
yrange: 0 10
#endif
#endproc
#if @figure_x = 1
#set XINC = $defaultinc( @XMIN, @XMAX )
#set xbinsize = $arith( @XINC/2 )
#endif
#if @figure_y = 1
#set YINC = $defaultinc( @YMIN, @YMAX )
#set ybinsize = $arith( @YINC/2 )
#endif
#endif
#write stderr
xbinsize is @xbinsize .. ybinsize is @ybinsize
#endwrite
// now read again, grouping by bin..
#if @contentfield = ""
#set context = heatmap
#include $chunk_read
#endif
#include $chunk_area
areacolor: @zerocolor
#if @xcats = yes
xscaletype: categories
xcategories: datafield=@x
catcompmethod: exact
#if @xaxis != "none"
xaxis.stubs: usecategories
#ifspec xlbl xaxis.label
#ifspec xlbldet xaxis.labeldetails
#ifspec stubfmt xaxis.stubformat
#ifspec xstubfmt xaxis.stubformat
#ifspec stubvert xaxis.stubvert
#ifspec xgrid xaxis.grid
#endif
#elseif @xrange = ""
xautorange: datafield=@x incmult=2.0
//#elseif @xrange = 0
#elseif $ntoken( 2, @xrange ) = ""
xautorange: datafield=@x mininit=@xrange incmult=2.0
#else
xrange: @xrange
#endif
#if @ycats = yes
yscaletype: categories
ycategories: datafield=@y
catcompmethod: exact
#if @yaxis != none
yaxis.stubs: usecategories
#ifspec ylbl yaxis.label
#ifspec ylbldet yaxis.labeldetails
#ifspec ystubfmt yaxis.stubformat
#ifspec ygrid yaxis.grid
#endif
#elseif @yrange = ""
yautorange: datafield=@y incmult=2.0
//#elseif @yrange = 0
#elseif $ntoken( 2, @yrange ) = ""
yautorange: datafield=@y mininit=@yrange incmult=2.0
#else
yrange: @yrange
#endif
#endproc
#if @xcats = ""
#include $chunk_xaxis
#endproc
#endif
#if @ycats = ""
#include $chunk_yaxis
#endproc
#endif
#if @contentfield = ""
// from now on use the grouped values..
#set x = @xgrp
#set y = @ygrp
#if @autocuts = 1
#call $squelch_display( 1 )
#endif
// run scatterplot (if autocuts = 1 this is a throwaway to find range of duplication..)
#include $chunk_doheatmap
#if @autocuts = 1
#call $squelch_display( 0 )
#endif
#write stderr
#+ max count at any cell is @MAXDUPS
#endwrite
#endif
#if @autocuts = 1
// automatically set cutofflist
#if @contentfield = ""
#set RANGEMAX = @MAXDUPS
#endif
#if @RANGEMAX <= 1
#set cutofflist = "1.0,0.8,0.6,0.4,0.2,0"
#elseif @RANGEMAX <= 8
#set cutofflist = "6,5,4,3,2,1"
#elseif @RANGEMAX <= 15
#set cutofflist = "12,10,8,6,4,1"
#elseif @RANGEMAX <= 30
#set cutofflist = "25,20,15,10,5,1"
#elseif @RANGEMAX <= 60
#set cutofflist = "50,40,30,20,10,1"
#elseif @RANGEMAX <= 120
#set cutofflist = "100,80,60,40,20,1"
#else
#set cutofflist = "250,200,150,100,50,1"
#endif
#proc legend
reset: yes
// moved this down.. needs to also happen w/ contentfield scg 4/11/04
// #include $chunk_doheatmap
#endif
#if @contentfield != "" || @autocuts = 1
#include $chunk_doheatmap
#endif
#setifnotgiven legend = "max+0.7 min+0.8"
#proc legend
location: @legend
reverseorder: @reverseleg
#ifspec legendfmt format
#ifspec legendsep sep
#ifspec legwrap wraplen
#ifspec legbreak extent
#ifspec legtitle title
#ifspec legbox backcolor
#ifspec legframe frame
#ifspec legtextdet textdetails
#endproc
//// title - added scg 8/8/05
#include $chunk_title
//// user post-plot include..
#if @include2 != ""
#include @include2
#endif
|
