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#!/bin/bash
set -e
pkg=poa
export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/test_data/* "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
gunzip -r *
poa -read_fasta test1.fa -clustal clustal.aln blosum80.mat
poa -read_msa clustal.aln -pir pir.aln blosum80.mat
poa -read_fasta test2.fa -pir pir.aln -best blosum80.mat
poa -read_fasta test3.fa -po po.aln blosum80.mat
poa -read_fasta test4.fa -do_global -clustal clustal.aln blosum80.mat
poa -read_fasta test5.fa -do_progressive -clustal clustal.aln blosum80.mat
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