1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
|
# Copyright (c) 1997-2024
# Ewgenij Gawrilow, Michael Joswig, and the polymake team
# Technische Universität Berlin, Germany
# https://polymake.org
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 2, or (at your option) any
# later version: http://www.gnu.org/licenses/gpl.txt.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#-------------------------------------------------------------------------------
package TikZ::Lattice;
use Polymake::Struct (
[ '@ISA' => 'Wire' ],
);
sub new {
my $self=&_new;
my $Graph=$self->source;
# we need more room for sloped edgelabels
my $widthfactor = 0.8;
if (defined($self->source->EdgeLabels)) {
$widthfactor*=2;
}
my @label_width=map {
(line_break_label_length($Graph->NodeLabels->($_))+1)*$widthfactor;
} 0..$Graph->n_nodes-1;
my $embedding=$Graph->Coord;
if (is_object($embedding)) {
# expecting Visual::GraphEmbedding here
$embedding->label_width=\@label_width;
$embedding->options->{dual}= $Graph->Mode eq "dual";
}
$self;
}
sub vertexStylesToString {
my ($self)=@_;
my $id = $self->id;
my $text = "";
my $number = @{$self->source->Vertices};
my ($vcolortext,$vcolors) = $self->uniqueColors("VertexColor",new RGB("255 255 255"),$number);
$text .= $vcolortext;
my ($bdcolortext,$bdcolors) = $self->uniqueColors("VertexBorderColor",new RGB("0 0 0"),$number);
$text .= $bdcolortext;
$text .= "\n % DEF VERTEXSTYLES\n";
my $bdthickness = $self->source->VertexBorderThickness;
my $labels = $self->source->VertexLabels;
my $label_flag = (defined($labels) && $labels !~ $Visual::hidden_re && $labels ne "") ? 1 : 0;
if (is_code($vcolors) || is_code($bdcolors) || is_code($bdthickness)) {
$self->nodecode = 1;
foreach my $i (0..$number-1) {
my $optionstring = "text=black, inner sep=2pt, rectangle, rounded corners=3pt,";
my $colid = is_code($vcolors) ? $vcolors->($i) : $vcolors;
my $bdcolid = is_code($bdcolors) ? $bdcolors->($i) : $bdcolors;
my $bdthick = is_code($bdthickness) ? $bdthickness->($i) : $bdthickness;
$optionstring .= "fill=$colid, draw=$bdcolid,";
$optionstring .= ", line width=$bdthick"."pt" if (defined($bdthick));
$text .= $self->tikzstyle("vertexstyle$id\_$i",$optionstring);
}
} else {
my $optionstring = "inner sep=2pt, rectangle, rounded corners=3pt,";
$optionstring .= "fill=$vcolors, draw=$bdcolors,";
$optionstring .= ", line width=$bdthick"."pt" if (defined($bdthickness));
$text .= $self->tikzstyle("vertexstyle$id",$optionstring);
}
return $text;
}
sub drawAllPoints {
my ($self,$trans,$pointset) = @_;
my $npoints = @{$self->source->Vertices};
my @idlist = defined($pointset) ? @$pointset : (0..$npoints-1);
return $self->pointsToString(\@idlist,1);
}
sub line_break_label_length {
return max(map {length($_)} split(/\\\\/,shift));
}
package TikZ::PhylogeneticTree;
use Polymake::Struct (
[ '@ISA' => 'Wire' ],
);
sub helperCoordinatesToString {
# Coordinate definitions
# we only need those if edges are not straight lines
my ($self)=@_;
my $id = $self->id; # this is used to make all TikZ ids globally unique
my $text = "\n % DEF HELPER COORDINATES\n";
foreach (my $e=$self->source->all_edges; $e; ++$e) {
my $a=$e->[0]; my $b=$e->[1];
my $va = $self->source->Vertices->[$a];
my $vb = $self->source->Vertices->[$b];
my $point = new Vector<Float>($vb);
if ($va->[1] != $vb->[1]) {
# only if the y coordinates differ the helper point is different from the predecessor node
$point->[0] = $vb->[0]; $point->[1] = $va->[1];
}
my $coordstring = Visual::print_coords($point);
$coordstring =~ s/\s+/, /g;
$text .= " \\coordinate (v$b\_$a$id) at ($coordstring);\n";
}
$text .= "\n";
return $text;
}
sub tikzedge {
my ($self,$e,$label) = @_;
my $a=$e->[0]; my $b=$e->[1];
my $id = $self->id;
my $text = "";
my $tikzid = "edgestyle$id";
$tikzid .= "_$a\_$b" if ($self->edgecode);
$text .= " \\draw[$tikzid] (v$b$id) -- (v$b\_$a$id) -- (v$a$id)";
$text .= " node [edgelabelstyle$id\_$a\_$b] {$label}" if (defined($label) && $label ne "");
$text .= ";\n";
return $text;
}
sub drawAllEdges {
my ($self) = @_;
my @edges;
foreach (my $e=$self->source->all_edges; $e; ++$e) {
push @edges, $e;
}
$self->edgesToString(\@edges);
}
sub toString {
my ($self, $trans)=@_;
my $text = "";
my $drawvertices = $self->source->VertexStyle !~ $Visual::hidden_re;
my $drawedges = $self->source->EdgeStyle !~ $Visual::hidden_re;
$text .= $self->header;
$text .= $self->coordinatesToString;
$text .= $self->helperCoordinatesToString;
$text .= $self->vertexStylesToString("right") if ($drawvertices);
$text .= $self->edgeStylesToString . $self->drawAllEdges if ($drawedges);
$text .= $self->drawAllPoints if ($drawvertices);
$text .= $self->trailer;
return $text;
}
###########################################
1
|
