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##########
Options
##########
The following demonstrates the options available in ``poretools``.
.. code-block:: bash
poretools --help
usage: poretools [-h] [-v]
{combine,fastq,fasta,stats,hist,events,readstats,tabular,nucdist,qualdist,winner,wiggle,times}
...
optional arguments:
-h, --help show this help message and exit
-v, --version Installed poretools version
[sub-commands]:
{combine,fastq,fasta,stats,hist,events,readstats,tabular,nucdist,qualdist,winner,wiggle,times}
combine Combine a set of FAST5 files in a TAR achive
fastq Extract FASTQ sequences from a set of FAST5 files
fasta Extract FASTA sequences from a set of FAST5 files
stats Get read size stats for a set of FAST5 files
hist Plot read size histogram for a set of FAST5 files
events Extract each nanopore event for each read
readstats Extract signal information for each read over time.
tabular Extract the lengths and name/seq/quals from a set of
FAST5 files in TAB delimited format
nucdist Get the nucl. composition of a set of FAST5 files
qualdist Get the qual score composition of a set of FAST5 files
winner Get the longest read from a set of FAST5 files
squiggle Plot the observed signals for FAST5 reads
times Return the start times from a set of FAST5 files in
tabular format
yield_plot Plot the yield over time for a set of FAST5 files
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