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#!/usr/bin/env python
#
# Author: Mike McKerns (mmckerns @caltech and @uqfoundation)
# Copyright (c) 1997-2016 California Institute of Technology.
# Copyright (c) 2016-2026 The Uncertainty Quantification Foundation.
# License: 3-clause BSD. The full license text is available at:
# - https://github.com/uqfoundation/pox/blob/master/LICENSE
#
# adapted from Mike McKerns' gsl.infect.shutils
"""
shell utilities for user environment and filesystem exploration
"""
import os
import sys
from subprocess import Popen, PIPE, STDOUT
popen4 = {'shell':True, 'stdin':PIPE, 'stdout':PIPE, 'stderr':STDOUT, \
'close_fds':True}
from ._disk import rmtree
MODE = eval('0o775')
def shelltype():
'''get the name (e.g. ``bash``) of the current command shell
Args:
None
Returns:
string name of the shell, or None if name can not be determined.
'''
shell = env('SHELL',all=False) or env('SESSIONNAME',all=False)
if shell in ('Console',): shell = 'cmd' # or not?
return os.path.basename(shell) if shell else None
def homedir():
'''get the full path of the user\'s home directory
Args:
None
Returns:
string path of the directory, or None if home can not be determined.
'''
try:
homedir = env('USERPROFILE',all=False) or os.path.expandvars('$HOME')
if '$' in homedir: raise ValueError
return homedir
except:
homedir = None
directory = os.curdir
while not homedir:
homedir = where(username(),os.path.abspath(directory))
directory = os.path.join(os.pardir,directory)
return homedir
def rootdir():
'''get the path corresponding to the root of the current drive
Args:
None
Returns:
string path of the directory.
'''
return os.path.splitdrive(os.getcwd())[0]+os.sep
def username():
'''get the login name of the current user
Args:
None
Returns:
string name of the user.
'''
try:
return os.getlogin()
except:
uname = os.path.expandvars('$USER')
if '$' in uname: uname = env('USERNAME', all=False)
return uname
def sep(type=''):
'''get the separator string for the given type of separator
Args:
type (str, default=''): one of ``{sep,line,path,ext,alt}``.
Returns:
separator string.
'''
if type in ['path','pathsep']: return os.pathsep
elif type in ['ext','extsep']: return os.extsep
elif type in ['line','linesep']: return os.linesep
elif type in ['alt','altsep']: return os.altsep
elif type not in ['','sep']:
if not type.endswith('sep'): type += 'sep'
print("Error: 'os.%s' not found" % type)
raise TypeError
return os.sep
def minpath(path,pathsep=None):
'''remove duplicate paths from given set of paths
Args:
path (str): path string (e.g. \'/Users/foo/bin:/bin:/sbin:/usr/bin\').
pathsep (str, default=None): path separator (e.g. ``:``).
Returns:
string composed of one or more paths, with duplicates removed.
Examples:
>>> minpath(\'.:/Users/foo/bin:.:/Users/foo/bar/bin:/Users/foo/bin\')
\'.:/Users/foo/bin:/Users/foo/bar/bin\'
'''
if not pathsep: pathsep = os.pathsep
pathlist = path.split(pathsep)
shortlist = []
for item in pathlist:
if item not in shortlist:
shortlist.append(item)
return pathsep.join(shortlist)
#NOTE: broke backward compatibility January 17, 2014
# firstval=False --> all=True
# pathDups=True --> minimal=False
def env(variable,all=True,minimal=False):
'''get dict of environment variables of the form ``{variable:value}``
Args:
variable (str): name or partial name for environment variable.
all (bool, default=True): if False, only return the first match.
minimal (bool, default=False): if True, remove all duplicate paths.
Returns:
dict of strings of environment variables.
Warning:
selecting all=False can lead to unexpected matches of *variable*.
Examples:
>>> env(\'*PATH\')
{\'PYTHONPATH\': \'.\', \'PATH\': \'.:/usr/bin:/bin:/usr/sbin:/sbin\'}
'''
#better than os.path.expandvars ?
import fnmatch
vals = {}
for key,value in os.environ.items():
if fnmatch.fnmatch(key,variable):
vals[key] = value
if minimal:
for key,value in vals.items():
if fnmatch.fnmatch(key,'*PATH'):
vals[key] = minpath(value)
if not all:
if len(vals) == 0: return
return list(vals.values())[0]
return vals
#NOTE: broke backward compatibility January 17, 2014
# listall --> all
def whereis(prog,all=False): #Unix specific (Windows punts to which)
'''get path to the given program
search the standard binary install locations for the given executable.
Args:
prog (str): name of an executable to search for (e.g. ``python``).
all (bool, default=True): if True, return a list of paths found.
Returns:
string path of the executable, or list of path strings.
'''
if sys.platform[:3] == 'win': return which(prog,all=all)
whcom = 'whereis '
p = Popen(whcom+prog, **popen4)
p.stdin.close()
pathstr = p.stdout.read()
p.stdout.close()
pathstr = pathstr.decode()
paths = pathstr.strip().split(":")[-1] #XXX: ':' ??? -1 ???
pathlist = paths.strip().split()
if not pathlist:
if not all: pathlist = ''
return pathlist
if not all: return pathlist[0]
return pathlist
#NOTE: broke backward compatibility January 17, 2014
# allowlink=True --> allow_links=True
# allowerror=False --> ignore_errors=True
# listall=False --> all=False
def which(prog,allow_links=True,ignore_errors=True,all=False): #Unix specific
'''get the path of the given program
search the user\'s paths for the given executable.
Args:
prog (str): name of an executable to search for (e.g. ``python``).
allow_links (bool, default=True): if False, replace link with fullpath.
ignore_errors (bool, default=True): if True, ignore search errors.
all (bool, default=False): if True, get list of paths for executable.
Returns:
if all=True, get a list of string paths, else return a string path.
'''
if sys.platform[:3] == 'win':
# try to deal with windows laziness about extensions
if not prog.endswith('.exe'): prog += '' if prog.count('.') else '.exe'
dirs = env('PATH',all=False) or os.path.abspath(os.curdir) # ?
paths = []
_type = None if allow_links else 'file'
for _dir in dirs.split(os.pathsep):
if all and paths: break
paths += find(prog, root=_dir, recurse=False, type=_type)
if not all: return paths[0] if len(paths) else ''
return paths
# non-windows
whcom = 'which '
if all: whcom += '-a '
p = Popen(whcom+prog, **popen4)
p.stdin.close()
pathstr = p.stdout.read()
p.stdout.close()
errind = 'no '+prog+' in'
pathstr = pathstr.decode()
if (errind in pathstr) and (ignore_errors):
return None
pathstr = minpath(pathstr.strip(),os.linesep)
paths = pathstr.split(os.linesep)
for i in range(len(paths)):
if not allow_links and os.path.islink(paths[i]):
paths[i] = os.path.realpath(paths[i])
if not all: return paths[0] if len(paths) else ''
return paths
def find(patterns,root=None,recurse=True,type=None,verbose=False):
'''get the path to a file or directory
Args:
patterns (str): name or partial name of items to search for.
root (str, default=None): path of top-level directory to search.
recurse (bool, default=True): if True, recurse downward from *root*.
type (str, default=None): a search filter.
verbose (bool, default=False): if True, be verbose about the search.
Returns:
a list of string paths.
Notes:
on some OS, *recursion* can be specified by recursion depth (*int*),
and *patterns* can be specified with basic pattern matching. Also,
multiple patterns can be specified by splitting patterns with a ``;``.
The *type* can be one of ``{file, dir, link, socket, block, char}``.
Examples:
>>> find(\'pox*\', root=\'..\')
[\'/Users/foo/pox/pox\', \'/Users/foo/pox/scripts/pox_launcher.py\']
>>>
>>> find(\'*shutils*;*init*\')
[\'/Users/foo/pox/pox/shutils.py\', \'/Users/foo/pox/pox/__init__.py\']
'''
if not root: root = os.curdir
if type is None: pass
elif type in ['f','file']: type = 'f'
elif type in ['d','dir']: type = 'd'
elif type in ['l','link']: type = 'l'
elif type in ['s','socket']: type = 's'
elif type in ['b','block']: type = 'b'
elif type in ['c','char']: type = 'c'
else:
if verbose: print("type '%s' not understood, will be ignored" % type)
type = None
try:
if sys.platform[:3] == 'win': raise NotImplementedError
pathlist = []
search_list = patterns.split(';')
for item in search_list:
command = 'find %s -name %r' % (root, item)
if type:
command += ' -type '+type
if not recurse:
command += ' -maxdepth 1'
elif recurse is not True:
command += ' -maxdepth %d' % (int(recurse) + 1)
if verbose: print(command)
p = Popen(command, **popen4)
p.stdin.close()
pathstr = p.stdout.readlines()
p.stdout.close()
errind = ['find:','Usage:']
if errind[1] in pathstr: #XXX: raise error?
if verbose: print("Error: incorrect usage '%s'" % command)
return
for path in pathstr:
path = path.decode()
if errind[0] not in path:
path = path.strip()
pathlist.append(os.path.abspath(path))
except:
folders = False;files = False;links = False
if type in ['f']: files = True
elif type in ['l']: links = True
elif type in ['d']: folders = True
else: folders = True;files = True;links = True
pathlist = walk(root,patterns,recurse,folders,files,links)
return pathlist
# TODO: enable recursion depth
def walk(root,patterns='*',recurse=True,folders=False,files=True,links=True):
'''walk directory tree and return a list matching the requested pattern
Args:
root (str): path of top-level directory to search.
patterns (str, default=\'*\'): (partial) name of items to search for.
recurse (bool, default=True): if True, recurse downward from *root*.
folders (bool, default=False): if True, include folders in the results.
files (bool, default=True): if True, include files in results.
links (bool, default=True): if True, include links in results.
Returns:
a list of string paths.
Notes:
patterns can be specified with basic pattern matching. Additionally,
multiple patterns can be specified by splitting patterns with a ``;``.
Examples:
>>> walk(\'..\', patterns=\'pox*\')
[\'/Users/foo/pox/pox\', \'/Users/foo/pox/scripts/pox_launcher.py\']
>>>
>>> walk(\'.\', patterns=\'*shutils*;*init*\')
[\'/Users/foo/pox/pox/shutils.py\', \'/Users/foo/pox/pox/__init__.py\']
'''
import fnmatch
#create a list by splitting patterns at ';'
pattern_list = patterns.split(';')
try:
_walk = os.walk
except AttributeError:
_walk = None
#print("walking... ")
if _walk:
results = []
for dirname,dirs,items in os.walk(root): #followlinks=False
if folders or links:
for name in dirs:
fullname = os.path.normpath(os.path.join(dirname,name))
if(folders and os.path.isdir(fullname) and \
not os.path.islink(fullname)) or \
(links and os.path.islink(fullname)):
for pattern in pattern_list:
if fnmatch.fnmatch(name,pattern):
results.append(fullname)
break
if files or links:
for name in items:
fullname = os.path.normpath(os.path.join(dirname,name))
if(files and os.path.isfile(fullname) and \
not os.path.islink(fullname)) or \
(links and os.path.islink(fullname)):
for pattern in pattern_list:
if fnmatch.fnmatch(name,pattern):
results.append(fullname)
break
#block recursion if disallowed
if not recurse:
dirs[:] = []
return results
#collect arguments into a bunch
class Bunch:
def __init__(self, **kwds):
self.__dict__.update(kwds)
arg = Bunch(recurse=recurse,pattern_list=pattern_list,
folders=folders, files=files, links=links, results=[])
def visit(arg,dirname,items):
#append to arg.results all relevant items
for name in items:
fullname = os.path.normpath(os.path.join(dirname,name))
if(arg.files and os.path.isfile(fullname) and \
not os.path.islink(fullname)) or \
(arg.folders and os.path.isdir(fullname) and \
not os.path.islink(fullname)) or \
(arg.links and os.path.islink(fullname)):
for pattern in arg.pattern_list:
if fnmatch.fnmatch(name,pattern):
arg.results.append(fullname)
break
#block recursion if disallowed
if not arg.recurse:
items[:] = []
os.path.walk(root,visit,arg) # removed in python 3.x
return arg.results
def where(name,path,pathsep=None):
'''get the full path for the given name string on the given search path.
Args:
name (str): name of file, folder, etc to find.
path (str): path string (e.g. \'/Users/foo/bin:/bin:/sbin:/usr/bin\').
pathsep (str, default=None): path separator (e.g. ``:``)
Returns:
the full path string.
Notes:
if pathsep is not provided, the OS default will be used.
'''
if not pathsep: pathsep = os.pathsep
for _path in path.split(pathsep):
candidate = os.path.join(_path,name)
if os.path.exists(candidate):
return os.path.abspath(candidate)
return None
def mkdir(path,root=None,mode=None):
'''create a new directory in the root directory
create a directory at *path* and any necessary parents (i.e. ``mkdir -p``).
Default mode is read/write/execute for \'user\' and \'group\', and then
read/execute otherwise.
Args:
path (str): string name of the new directory.
root (str, default=None): path at which to build the new directory.
mode (str, default=None): octal read/write permission [default: 0o775].
Returns:
string absolute path for new directory.
'''
if mode is None: mode = MODE
if not root: root = os.curdir
newdir = os.path.join(root,path)
absdir = os.path.abspath(newdir)
import errno
try:
os.makedirs(absdir,mode)
return absdir
except OSError:
err = sys.exc_info()[0]
if (err.errno != errno.EEXIST) or (not os.path.isdir(absdir)):
raise
def shellsub(command):
'''parse the given command to be formatted for remote shell invocation
secure shell (``ssh``) can be used to send and execute commands to remote
machines (using ``ssh <hostname> <command>``). Additional escape characters
are needed to enable the command to be correctly formed and executed
remotely. *shellsub* attemps to parse the given command string correctly
so that it can be executed remotely with ssh.
Args:
command (str): the command to be executed remotely.
Returns:
the parsed command string.
'''
import re
command = re.compile(r"\'").sub(r"\\'",command)
command = re.compile(r'\"').sub(r'\\"',command)
command = re.compile(r'\$').sub(r'\\$',command)
command = re.compile(r'\(').sub(r'\\(',command)
command = re.compile(r'\)').sub(r'\\)',command)
#command = re.compile(r'\{').sub(r'\\{',command)
#command = re.compile(r'\}').sub(r'\\}',command)
#command = re.compile(r'\[').sub(r'\\[',command)
#command = re.compile(r'\]').sub(r'\\]',command)
#command = re.compile(r'\~').sub(r'\\~',command)
#command = re.compile(r'\!').sub(r'\\!',command)
#command = re.compile(r'\&').sub(r'\\&',command)
#command = re.compile(r'\|').sub(r'\\|',command)
#command = re.compile(r'\*').sub(r'\\*',command)
#command = re.compile(r'\%').sub(r'\\%',command)
#command = re.compile(r'\#').sub(r'\\#',command)
#command = re.compile(r'\@').sub(r'\\@',command)
#command = re.compile(r'\:').sub(r'\\:',command)
#command = re.compile(r'\;').sub(r'\\;',command)
#command = re.compile(r'\,').sub(r'\\,',command)
#command = re.compile(r'\.').sub(r'\\.',command)
#command = re.compile(r'\?').sub(r'\\?',command)
#command = re.compile(r'\>').sub(r'\\>',command)
#command = re.compile(r'\<').sub(r'\\<',command)
#command = re.compile(r'\/').sub(r'\\/',command)
#command = re.compile('\\\\').sub('\\\\\\\\',command)
return command
# backward compatibility
getSHELL = shelltype
getHOME = homedir
getROOT = rootdir
getUSER = username
getSEP = sep
stripDups = minpath
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