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try:
# Prefer setuptools if it exists - cleaner uninstall
from setuptools import setup
except ImportError:
from distutils.core import setup
import glob
import os.path
import re
import warnings
VERSION_FILE = '../common_src/version.ml'
VERSION_PATTERN = r'^let version = "(.*)"$'
def get_version():
"""
parse version
"""
r = re.compile(VERSION_PATTERN)
if not os.path.exists(VERSION_FILE):
return 'unknown'
with open(VERSION_FILE) as fp:
for line in fp:
m = r.match(line)
if m:
return m.group(1)
raise ValueError("Couldn't find version in {0}".format(VERSION_FILE))
def scripts():
# Scripts depending on biopython
scripts = [i for i in glob.glob('*.py') if not i.startswith('test_') and i != 'setup.py']
try:
# Check for biopython
import Bio
except ImportError:
warnings.warn("BioPython is not installed. Some scripts will not work")
return scripts
setup(name='pplacer-scripts',
version=get_version(),
description='Complementary scripts for use with pplacer',
author='Erick Matsen, Aaron Gallagher, Connor McCoy, Brian Hodges',
url='http://matsen.fhcrc.org/pplacer',
scripts=scripts(),
)
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