1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
|
/***************************************************************************
* Copyright (C) 2005 by Ari Loytynoja *
* ari@sink *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#include <string>
#include <iostream>
#include <fstream>
#include <ctime>
#include "config.h"
#include "writefile.h"
#include "treenode.h"
#include "hirschberg.h"
#include "site.h"
#include "fullprobability.h"
#include "postprobability.h"
#include "characterprobability.h"
using namespace std;
TreeNode::~TreeNode()
{
}
int TreeNode::totalNodes = 0;
int TreeNode::alignedNodes = 0;
bool TreeNode::rooted = false;
|
