File: DnaMotifBigStat

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#this file contains the statistics
ABBREV: myb:  MYB
ABBREV: MYB:  
ABBREV: hook:  A.T HOOK
ABBREV: A.T HOOK:  
ABBREV: fun:  FUNGAL-TYPE
ABBREV: FUNGAL-TYPE:  
ABBREV: hbox:  HOMEOBOX
ABBREV: HOMEOBOX:  
ABBREV: fork:  FORK-HEAD
ABBREV: FORK-HEAD:  
ABBREV: znc:  ZINC FINGERS
ABBREV: ZINC FINGERS:  
ABBREV: ets:  ETS-DOMAIN
ABBREV: ETS-DOMAIN:  
ABBREV: hmg:  HMG BOX
ABBREV: HMG BOX:  
ABBREV: hlh:  HELIX-LOOP-HELIX
ABBREV: HELIX-LOOP-HELIX:  
ABBREV: bas:  BASIC MOTIF|BASIC DOMAIN
ABBREV: BASIC MOTIF|BASIC DOMAIN:  
#Motif	NumProt	NumDnaBindProt	PerDnaBindProt	NumBindDomProt	PerBindDomProt
RKRKR[KR]	12	12	 100	10	83.33	HOMEOBOX:10	hmp1_bovin,pou2_brare,hmp1_human,hrx_human,hmp1_melga,hmp1_mouse,hmp1_oncke,hmp1_oncmy,hmp1_pig,hmp1_rat,hmp1_sheep,sko1_yeast	In dna binding domain,In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain)
[RK]R[MS]KxK[KR]	163	162	 99.38	161	99.38	HOMEOBOX:161	hxa5_ambme,hxa9_ambme,hxb1_ambme,scr_apime,h114_brare,hox3_brafl,hx5l_brare,hxa1_brare,hxb4_brare,hxb5_brare,hxb6_brare,hxc5_brare,hxc6_brare,hxd4_brare,hxda_brare,hxdc_brare,hxa2_chick,hxa4_chick,hxa7_cotja,hxa9_cavpo,hxa9_chick,hxab_chick,hxb1_chick,hxb1_cypca,hxb3_chick,hxb4_chick,hxb5_chick,hxb6_chick,hxd3_chick,hxd4_chick,hxd8_chick,hxd9_chick,hxda_chick,hxdb_chick,hxdc_chick,vab7_caeel,hmab_drome,hmdf_drome,hmdl_drome,hmev_drome,hmft_drohy,hmft_drome,hmla_drome,hmpb_drome,hmux_drome,hmz1_drome,hmz2_drome,scr_drome,hxa9_fugru,hxb4_fugru,hxc9_fugru,evx1_human,evx2_human,hb9_human,hxa1_human,hxa2_human,hxa3_human,hxa4_human,hxa5_human,hxa6_human,hxa7_human,hxa9_human,hxaa_human,hxab_human,hxb1_human,hxb2_human,hxb3_human,hxb4_human,hxb5_human,hxb6_human,hxb7_human,hxb8_human,hxb9_human,hxc4_human,hxc5_human,hxc6_human,hxc8_human,hxc9_human,hxcb_human,hxcc_human,hxd3_human,hxd4_human,hxd8_human,hxd9_human,hxda_human,hxdb_human,hxdc_human,ipf1_human,evx1_mouse,evx2_mouse,hxa1_mouse,hxa2_mouse,hxa3_mouse,hxa4_mouse,hxa5_mouse,hxa6_mouse,hxa7_mouse,hxa9_mouse,hxaa_mouse,hxab_mouse,hxb1_mouse,hxb3_mouse,hxb4_mouse,hxb5_mouse,hxb6_mouse,hxb7_mouse,hxb8_mouse,hxb9_mouse,hxc4_mouse,hxc5_mouse,hxc6_mouse,hxc8_mouse,hxc9_mouse,hxca_mouse,hxcb_mouse,hxcc_mouse,hxd1_mouse,hxd3_mouse,hxd4_mouse,hxd8_mouse,hxd9_mouse,hxda_mouse,hxdb_mouse,hxdc_mouse,ipf1_mesau,ipf1_mouse,hxa2_notvi,hxc5_notvi,hxc6_notvi,hxdb_notvi,hxb8_pig,hxa2_rat,hxa4_rat,hxa5_rat,hxa7_rat,hxb7_rat,hxb8_rat,hxc4_rat,hxc8_rat,hxd3_rat,ipf1_rat,hxa4_sheep,hxa5_salsa,hxa5_sheep,hxa7_sheep,hxb2_salsa,hxc6_sheep,hxc9_sheep,hb7a_xenla,hb7b_xenla,hm8_xenla,hx3_xenla,hxa1_xenla,hxa7_xenla,hxb3_xenla,hxb4_xenla,hxb5_xenla,hxb6_xenla,hxb9_xenla,hxc5_xenla,hxc6_xenla,hxd1_xenla,pr05_yeast	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding
[PLV]RK[ST]R[DE]K	14	14	 100	14	100	BASIC MOTIF|BASIC DOMAIN:14	cebb_chick,ceb_drome,ceb_drovi,ceba_human,cebb_human,cebd_human,cebe_human,ceba_mouse,cebb_mouse,cebd_mouse,ceba_rat,cebb_rat,cebd_rat,cebe_rat	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
RRxRxKxKQ	5	5	 100	5	100	HOMEOBOX:5	ath5_arath,ath6_arath,hat4_arath,hat5_arath,hat7_arath	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
RRxKRxK[PLV]	7	4	 57.14	4	100	FORK-HEAD:4	sdc3_caeel,fd4_drome,hn3g_human,hn3g_mouse,hn3g_rat	Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
R{2,3}K{3,4}[PLRKE]	15	11	 73.33	11	100	BASIC MOTIF|BASIC DOMAIN:11	creb_bovin,creb_chlvr,crem_canfa,bbf2_drome,atf1_human,creb_human,relb_human,atf1_mouse,crea_mouse,creb_mouse,relb_mouse,creb_rat,crem_rat,dpol_rcmvm,orc5_yeast	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,Not dna binding,Not dna binding
[GAPLV]RKRKKR	29	28	 96.55	28	100	HOMEOBOX:28	br11_brare,pou1_brare,sgf3_bommo,zp12_brare,zp23_brare,zp47_brare,zp50_brare,cf1a_drome,brn1_human,brn4_human,chd3_human,oc3n_human,oct6_human,brn1_mouse,brn4_mouse,oc11_mouse,oc3n_mouse,oct6_mouse,oc3n_rat,oct6_rat,sk1a_rat,sk1i_rat,hm16_xenla,hm19_xenla,hm20_xenla,po3a_xenla,po3b_xenla,pou1_xenla,pou2_xenla	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
R[PL]xGx[KR][KR]xK	11	10	 90.9	10	100	ETS-DOMAIN:10	p53_brare,elg_drome,elk1_human,erf_human,etv2_human,sapa_human,sapb_human,elk1_mouse,erf_mouse,etv2_mouse,sapa_mouse	Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
[ED]R{4,}?[ED]	13	9	 69.23	9	100	BASIC MOTIF|BASIC DOMAIN:9	nr54_human,psf_human,usf1_human,usf2_human,ve2_hpv37,ve2_hpv48,usf1_mouse,usf2_mouse,usf1_rabit,usf2_rat,usf_strpu,usf1_xenbo,cbf1_yeast	Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
PKRPx{5,8}Lx{2,4}RxKxK	4	4	 100	4	100	HMG BOX:4	ssrp_chick,ssrp_human,ssrp_mouse,ssrp_rat	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
RRKx{5,7}RRR	31	24	 77.41	24	100	BASIC MOTIF|BASIC DOMAIN:24	myf5_bovin,myod_brare,prt1_bufja,prt2_bufja,myf5_chick,myf6_chick,myod_caebr,myod_caeel,myod_chick,myod_cotja,myod_drome,hsp2_gorgo,hsp2_human,myf5_human,myf6_human,myod_human,myf5_mouse,myf6_mouse,myod_mouse,myf5_notvi,myo1_oncmy,myo2_oncmy,hsp2_panpa,hsp2_pantr,hsp2_ponpy,myod_pig,myf6_rat,myod_rat,myod_sheep,myf5_xenla,myod_xenla	In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
KR[GPL]R[GPL]R[GLP]RK	7	7	 100	3	42.85	A.T HOOK:9	t2d1_drome,hmgc_human,hmgi_human,hmgy_human,hmgc_mouse,hmgy_mouse,prh_petcr	Dna binding (signal not in binding domain),Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,Dna binding (signal not in binding domain)
KR[ST]RxxR{2,4}[QL]	6	6	 100	6	100	BASIC MOTIF|BASIC DOMAIN:6	ces2_caeel,dbp_human,tef_human,dbp_mouse,dbp_rat,tef_rat	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
KRxRxRx{2,6}RKRK	16	16	 100	15	93.75	BASIC MOTIF|BASIC DOMAIN:15	ap1_chick,ap1_cotja,junb_cypca,jund_chick,ap1_drome,ap1_human,junb_human,jund_human,ap1_mouse,junb_mouse,jund_mouse,ap1_pig,ap1_rat,junb_rat,jund_rat,ap1_serca	In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
R[RK]{2,4}[PL][RK][MNQ]R	10	9	 90	8	88.88	BASIC MOTIF|BASIC DOMAIN:8	junb_cypca,jund_chick,hsp1_droau,junb_human,jund_human,xbp1_human,junb_mouse,jund_mouse,junb_rat,jund_rat	Dna binding (signal not in binding domain),In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
[QMN]R[RK]xKx[RK][RK]	265	262	 98.86	261	99.61	HOMEOBOX:261	hxa5_ambme,hxa9_ambme,hxad_ambme,hxb1_ambme,rt11_acaca,scr_apime,br11_brare,gsc_brare,h114_brare,hmma_brare,hmmb_brare,hmmc_brare,hmmd_brare,hmx1_bovin,hox3_brafl,hx5l_brare,hxa1_brare,hxad_brare,hxb4_brare,hxb5_brare,hxb6_brare,hxc5_brare,hxc6_brare,hxd4_brare,hxda_brare,hxdc_brare,hxdd_brare,pax6_brare,pou1_brare,pou2_brare,sgf3_bommo,zp12_brare,zp23_brare,zp47_brare,zp50_brare,gsc_chick,hm18_caeel,hmd1_chick,hmx1_chick,hmx2_chick,hmx2_cotja,hxa2_chick,hxa4_chick,hxa7_cotja,hxa9_cavpo,hxa9_chick,hxab_chick,hxb1_chick,hxb1_cypca,hxb3_chick,hxb4_chick,hxb5_chick,hxb6_chick,hxd3_chick,hxd4_chick,hxd8_chick,hxd9_chick,hxda_chick,hxdb_chick,hxdc_chick,hxdd_chick,li11_caeel,mec3_caebr,mec3_caeel,mec3_caevu,oct1_chick,pax6_chick,pax6_cotja,un30_caeel,vab7_caeel,cf1a_drome,gsc_drome,hmab_drome,hmdf_drome,hmdl_drome,hmes_drome,hmev_drome,hmft_drohy,hmft_drome,hmla_drome,hmpb_drome,hmsh_drome,hmux_drome,hmz1_drome,hmz2_drome,pdm1_drome,pdm2_drome,pdm2_drovi,scr_drome,hxa9_fugru,hxb4_fugru,hxc9_fugru,brn1_human,brn4_human,cdx1_human,cdx2_human,evx1_human,evx2_human,hb9_human,hmx1_human,hxa1_human,hxa2_human,hxa3_human,hxa4_human,hxa5_human,hxa6_human,hxa7_human,hxa9_human,hxaa_human,hxab_human,hxad_human,hxb1_human,hxb2_human,hxb3_human,hxb4_human,hxb5_human,hxb6_human,hxb7_human,hxb8_human,hxb9_human,hxbd_human,hxc4_human,hxc5_human,hxc6_human,hxc8_human,hxc9_human,hxcb_human,hxcc_human,hxcd_human,hxd3_human,hxd4_human,hxd8_human,hxd9_human,hxda_human,hxdb_human,hxdc_human,hxdd_human,ipf1_human,oc3a_human,oc3b_human,oc3n_human,oct1_human,oct2_human,oct6_human,pax6_human,pmx1_human,rms1_human,brn1_mouse,brn4_mouse,cdx1_mouse,cdx2_mesau,cdx2_mouse,cdx4_mouse,cx10_mouse,evx1_mouse,evx2_mouse,gsc_mouse,gsh2_mouse,gshi_mouse,hmx1_mouse,hmx2_mouse,hxa1_mouse,hxa2_mouse,hxa3_mouse,hxa4_mouse,hxa5_mouse,hxa6_mouse,hxa7_mouse,hxa9_mouse,hxaa_mouse,hxab_mouse,hxad_mouse,hxb1_mouse,hxb3_mouse,hxb4_mouse,hxb5_mouse,hxb6_mouse,hxb7_mouse,hxb8_mouse,hxb9_mouse,hxbd_mouse,hxc4_mouse,hxc5_mouse,hxc6_mouse,hxc8_mouse,hxc9_mouse,hxca_mouse,hxcb_mouse,hxcc_mouse,hxd1_mouse,hxd3_mouse,hxd4_mouse,hxd8_mouse,hxd9_mouse,hxda_mouse,hxdb_mouse,hxdc_mouse,hxdd_mouse,ipf1_mesau,ipf1_mouse,msx3_mouse,oc11_mouse,oc3n_mouse,oct1_mouse,oct2_mouse,oct3_mouse,oct6_mouse,pax6_mouse,pmx1_mouse,hxa2_notvi,hxc5_notvi,hxc6_notvi,hxdb_notvi,pax6_oryla,hxb8_pig,oct2_pig,cdx1_rat,hxa2_rat,hxa4_rat,hxa5_rat,hxa7_rat,hxb7_rat,hxb8_rat,hxc4_rat,hxc8_rat,hxd3_rat,ipf1_rat,msx2_rat,oc3n_rat,oct6_rat,pax6_rat,sk1a_rat,sk1i_rat,hxa4_sheep,hxa5_salsa,hxa5_sheep,hxa7_sheep,hxb2_salsa,hxc6_sheep,hxc9_sheep,rev_sivm1,gsca_xenla,gscb_xenla,hb7a_xenla,hb7b_xenla,hm8_xenla,hx3_xenla,hxa1_xenla,hxa7_xenla,hxb3_xenla,hxb4_xenla,hxb5_xenla,hxb6_xenla,hxb9_xenla,hxc5_xenla,hxc6_xenla,hxd1_xenla,mix1_xenla,oct1_xenla,pax6_xenla,po3a_xenla,po3b_xenla,pou1_xenla,pou2_xenla,pho2_yeast	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
RKx{7,12}RK[STMNQ]KK	16	12	 75	12	100	ZINC FINGERS:11;HMG BOX:8.33	gcr_aotna,gcr_cavpo,aant_hdvit,aant_hdvl1,aant_hdvna,aant_hdvwo,gcr_human,gcr_mouse,gcr_oncmy,gcr_parol,gcr_rat,gcr_sagoe,gcr_saibb,gcr_tupgb,gcr_xenla,rox1_yeast	In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
[QL]K{2,4}x{8,12}[RK][QL][RK][QL]KR	9	9	 100	9	100	HOMEOBOX:9	brn3_chick,un86_caeel,ipou_drome,br3a_human,br3b_human,br3c_human,br3a_mouse,br3b_mouse,br3c_mouse	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
RK[RK][QML][RK]xR	18	16	 88.88	15	93.75	BASIC MOTIF|BASIC DOMAIN:15	ap1_chick,ap1_cotja,junb_cypca,jund_chick,ap1_drome,msl1_drome,ap1_human,junb_human,jund_human,ap1_mouse,junb_mouse,jund_mouse,ap1_pig,ap1_rat,junb_rat,jund_rat,ap1_serca,tfc5_yeast	In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding
KRx{1,3}Hx{3,5}R[LQ]RR	20	20	 100	20	100	BASIC MOTIF|BASIC DOMAIN:20	myc_astvu,myc_brare,myc1_cypca,myc2_cypca,myc_calja,myc_canfa,myc_carau,myc_chick,myc_felca,myc_human,myc_hylla,myc_marmo,myc_mouse,myc_oncmy,myc_pantr,myc_pig,myc_rat,myc_sheep,myc1_xenla,myc2_xenla	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
RR[TS]x[QK][KR][KN]	70	68	 97.14	68	100	ZINC FINGERS:68	vdr_bovin,vdr_bovin,tha_chick,tha_chick,thb_chick,thb_chick,vdr_chick,vdr_chick,vdr_cotja,vdr_cotja,dnl4_human,dnl4_human,rrb2_human,rrb2_human,rrg1_human,rrg1_human,rrg2_human,rrg2_human,tha1_human,tha1_human,tha2_human,tha2_human,thb1_human,thb1_human,thb2_human,thb2_human,vdr_human,vdr_human,rra_mouse,rra_mouse,rrb_mouse,rrb_mouse,rrg1_mouse,rrg1_mouse,rrg2_mouse,rrg2_mouse,tha1_mouse,tha1_mouse,tha2_mouse,tha2_mouse,vdr_mouse,vdr_mouse,rra_notvi,rra_notvi,rrb_notvi,rrb_notvi,tha2_rat,tha2_rat,tha_ranca,tha_ranca,thb_ranca,thb_ranca,vdr_rat,vdr_rat,tha1_sheep,tha1_sheep,thb1_sheep,thb1_sheep,rra_xenla,rra_xenla,rrg1_xenla,rrg1_xenla,rrg2_xenla,rrg2_xenla,thaa_xenla,thaa_xenla,thab_xenla,thab_xenla,vdr_xenla,vdr_xenla	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
[DE]KxRRK[MNQ]	23	23	 100	23	100	ZINC FINGERS:23	gcr_aotna,prgr_chick,andr_human,gcr_human,mcr_human,prgr_human,andr_mouse,gcr_mouse,prgr_mouse,gcr_oncmy,gcr_parol,andr_rabit,andr_rat,gcr_rat,mcr_rat,prgr_rabit,gcr_sagoe,gcr_saibb,prgr_sheep,gcr_tupgb,mcr_tupgb,gcr_xenla,mcr_xenla	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
R[RK]x[KR]x[RK]{2,}?[DE]	132	117	 88.63	115	98.29	HOMEOBOX:115	hxa5_ambme,hxb1_ambme,scr_apime,h114_brare,hox3_brafl,hx5l_brare,hxa1_brare,hxb4_brare,hxb5_brare,hxb6_brare,hxc5_brare,hxc6_brare,hxd4_brare,pax6_brare,ctcf_chick,hxa4_chick,hxa7_cotja,hxb1_chick,hxb1_cypca,hxb3_chick,hxb4_chick,hxb5_chick,hxb6_chick,hxd3_chick,hxd4_chick,hxd8_chick,pax6_chick,pax6_cotja,un30_caeel,brm_drome,croc_drome,hmdf_drome,hmft_drohy,hmft_drome,hmux_drome,hmz1_drome,scr_drome,sus_drome,t2d2_drome,hxb4_fugru,cg2f_human,chd3_human,ctcf_human,hxa1_human,hxa3_human,hxa4_human,hxa5_human,hxa6_human,hxa7_human,hxb1_human,hxb3_human,hxb4_human,hxb5_human,hxb6_human,hxb7_human,hxb8_human,hxc4_human,hxc5_human,hxc6_human,hxc8_human,hxd3_human,hxd4_human,hxd8_human,ipf1_human,pax6_human,cx10_mouse,gsh2_mouse,gshi_mouse,hxa1_mouse,hxa3_mouse,hxa4_mouse,hxa5_mouse,hxa6_mouse,hxa7_mouse,hxb1_mouse,hxb3_mouse,hxb4_mouse,hxb5_mouse,hxb6_mouse,hxb7_mouse,hxb8_mouse,hxc4_mouse,hxc5_mouse,hxc6_mouse,hxc8_mouse,hxd1_mouse,hxd3_mouse,hxd4_mouse,hxd8_mouse,ipf1_mesau,ipf1_mouse,pax6_mouse,hxc5_notvi,hxc6_notvi,pax6_oryla,dpod_plafk,hxb8_pig,hxa4_rat,hxa5_rat,hxa7_rat,hxb7_rat,hxb8_rat,hxc4_rat,hxc8_rat,hxd3_rat,ipf1_rat,pax6_rat,h2b1_strpu,h2b2_strpu,hxa4_sheep,hxa5_salsa,hxa5_sheep,hxa7_sheep,hxc6_sheep,hb7a_xenla,hb7b_xenla,hm8_xenla,hxa1_xenla,hxa7_xenla,hxb3_xenla,hxb4_xenla,hxb5_xenla,hxb6_xenla,hxc5_xenla,hxc6_xenla,hxd1_xenla,pax6_xenla,snf2_yeast	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,In dna binding domain,Not dna binding,Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding
R{2,3}xK{2,3}R[ST]	12	11	 91.66	11	100	HOMEOBOX:11	oct1_chick,pdm1_drome,pdm2_drome,pdm2_drovi,oct1_human,oct2_human,oct1_mouse,oct2_mouse,oct2_pig,dpol_rcmvm,oct1_rat,oct1_xenla	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain
R[MNQ]x{4,8}R[MNQ]RR	26	21	 80.76	18	85.71	BASIC MOTIF|BASIC DOMAIN:18	area_aspor,hsp2_bovin,fos_chick,fos_cypca,fra2_chick,fos_fugru,atf5_human,cebg_human,fos_human,fosb_human,fra1_human,fra2_human,mycn_human,rev_hv1c4,ve2_hpv17,ve2_hpv25,cebg_mouse,fos_mouse,fosb_mouse,fra1_mouse,fra2_mouse,cebg_rat,fos_rat,fra1_rat,fra2_rat,fos_tetfl	Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,Not dna binding,Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
RER[MNQ]Kx{4,8}R[MNQ]RR	16	16	 100	16	100	BASIC MOTIF|BASIC DOMAIN:16	fos_chick,fos_cypca,fra2_chick,fos_fugru,fos_human,fosb_human,fra1_human,fra2_human,fos_mouse,fosb_mouse,fra1_mouse,fra2_mouse,fos_rat,fra1_rat,fra2_rat,fos_tetfl	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
R[QMPL]RR[DE]R	9	8	 88.88	8	100	BASIC MOTIF|BASIC DOMAIN:8	cebd_human,cebe_human,cebg_human,cebd_mouse,cebg_mouse,cebd_rat,cebe_rat,cebg_rat,u2af_schpo	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding
[QL]xKRxKxKK	24	24	 100	24	100	HOMEOBOX:24	hme3_apime,hme6_apime,hme1_brare,hme2_brare,hme3_brare,isl1_brare,isl2_brare,isl3_brare,hme1_chick,hme2_chick,isl1_chick,isl2_chick,hmen_drome,hmen_drovi,hmin_drome,hme1_human,hme2_human,isl1_human,hme1_mouse,hme2_mouse,is2a_oncts,is2b_oncts,isl3_oncts,isl2_rat	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
KK[MNQSTC]R[MNQSTC]K[MNQSTC]	12	12	 100	12	100	ZINC FINGERS:12	ppar_cavpo,ppar_human,ppas_human,ppat_human,ppar_mouse,ppas_mouse,ppat_mouse,ppar_rat,ppat_rabit,ppar_xenla,ppas_xenla,ppat_xenla	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
R[KR][RK]x{0,2}[RK]x{0,2}[RK]x{3,5}[RK]x{0,2}[RK][RK][RK][RK][PMQL]	22	16	 72.72	15	93.75	BASIC MOTIF|BASIC DOMAIN:15	ap1_chick,ap1_cotja,junb_cypca,jund_chick,prt2_clupa,ap1_drome,ap1_human,hsp2_horse,hsp3_horse,junb_human,jund_human,ap1_mouse,junb_mouse,jund_mouse,prt5_oncmy,prt6_oncmy,ap1_pig,ap1_rat,junb_rat,jund_rat,ap1_serca	In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
K[KR][QMN][RK]R[QMN]R	4	4	 100	4	100	HOMEOBOX:4	hnfb_human,hnfb_mouse,hnfb_pig,hnfb_rat	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
[PLV]K[RK]x[RK][RK]KL	4	3	 75	3	100	ETS-DOMAIN:2;BASIC MOTIF|BASIC DOMAIN:33.33	h10_human,pu1_human,pu1_mouse,hbpa_wheat	Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain
R[RK]{3,}?[DE]K	12	10	 83.33	10	100	HOMEOBOX:1;BASIC MOTIF|BASIC DOMAIN:90	atf5_human,roa2_human,usf1_human,usf2_human,zep2_human,usf1_mouse,usf2_mouse,usf1_rabit,usf2_rat,usf_strpu,usf1_xenbo,mat2_yeast	In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
[MI]VWSRD[HEQ]RRK	8	8	 100	8	100	HMG BOX:8	sry_calja,sry_gorgo,sry_halgr,sry_horse,sry_human,sry_macfa,sry_melme,sry_pig	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
[DE]KR[MQN]R[MQN]R	13	12	 92.3	12	100	ZINC FINGERS:12	usp_drome,rxra_human,rxrb_human,rxrg_human,rxra_mouse,rxrb_mouse,rxrg_mouse,usp_manse,rrxb_rat,rxra_rat,rxra_xenla,rxrg_xenla	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
DK[QL]KK[QL]	5	5	 100	2	40	MYB:6	dpoa_human,myba_human,dpoa_mouse,myba_mouse,dpoa_rat	Dna binding (signal not in binding domain),In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,Dna binding (signal not in binding domain)
RKRx{12,16}RRKK	12	11	 91.66	11	100	BASIC MOTIF|BASIC DOMAIN:11	creb_bovin,creb_chlvr,crem_canfa,chd3_human,crea_human,creb_human,creb_hydat,crea_mouse,creb_mouse,crem_mouse,creb_rat,crem_rat	In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
KR[MNSQ]R[MNSQ]R	27	20	 74.07	20	100	ZINC FINGERS:12;BASIC MOTIF|BASIC DOMAIN:40	ap1_chick,ap1_cotja,u2af_caebr,u2af_caeel,ap1_drome,usp_drome,h1l6_ensmi,ap1_human,ddx8_human,rxra_human,rxrb_human,rxrg_human,sfr3_human,ap1_mouse,rxra_mouse,rxrb_mouse,rxrg_mouse,usp_manse,ap1_pig,ap1_rat,rrxb_rat,rxra_rat,ap1_serca,rxra_xenla,rxrg_xenla,pop1_yeast	In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding
RKR[PLQMN]R[PLQMN]R	16	16	 100	15	93.75	BASIC MOTIF|BASIC DOMAIN:15	ap1_chick,ap1_cotja,junb_cypca,jund_chick,ap1_drome,ap1_human,junb_human,jund_human,ap1_mouse,junb_mouse,jund_mouse,ap1_pig,ap1_rat,junb_rat,jund_rat,ap1_serca	In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
RRxRxRKQ	16	16	 100	16	100	HOMEOBOX:6;BASIC MOTIF|BASIC DOMAIN:62.5	gbf1_arath,gbf2_arath,gbf3_arath,gsbd_drome,hmpr_drome,pax3_human,pax7_human,ocs1_maize,pax3_mouse,pax7_mouse,cpr1_petcr,cpr2_petcr,cpr3_petcr,taf1_tobac,emp1_wheat,hbpa_wheat	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
RRxR[PVL]RK	26	24	 92.3	24	100	HOMEOBOX:6;BASIC MOTIF|BASIC DOMAIN:75	gbf1_arath,gbf1_arath,gbf2_arath,gbf2_arath,gbf3_arath,gbf3_arath,gsbd_drome,gsbd_drome,gsbp_drome,gsbp_drome,hmpr_drome,hmpr_drome,moz_human,moz_human,ocs1_maize,ocs1_maize,cpr1_petcr,cpr1_petcr,cpr3_petcr,cpr3_petcr,taf1_tobac,taf1_tobac,emp1_wheat,emp1_wheat,hbpa_wheat,hbpa_wheat	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Not dna binding,Not dna binding,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
[PLQMKR]R[KR][QM][KR]RxK	22	22	 100	22	100	FORK-HEAD:22	axia_brare,axia_brare,sgf1_bommo,sgf1_bommo,fkh_drome,fkh_drome,hn3a_human,hn3a_human,hn3g_human,hn3g_human,hn3a_mouse,hn3a_mouse,hn3b_mouse,hn3b_mouse,hn3g_mouse,hn3g_mouse,hn3a_rat,hn3a_rat,hn3b_rat,hn3b_rat,hn3g_rat,hn3g_rat	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
N[QR]RQ[RK][EG]KR[IVLS]	26	26	 100	26	100	HOMEOBOX:26	hmp1_bovin,pou2_brare,oct1_chick,pdm1_drome,pdm2_drome,pdm2_drovi,hmp1_human,oc3a_human,oc3b_human,oct1_human,oct2_human,hmp1_melga,hmp1_mouse,oc11_mouse,oct1_mouse,oct2_mouse,oct3_mouse,hmp1_oncke,hmp1_oncmy,hmp1_pig,oct2_pig,hmp1_rat,sk1a_rat,sk1i_rat,hmp1_sheep,oct1_xenla	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
RRKx{3,5}R[DE]R{3,}?[PLV]	48	48	 100	48	100	BASIC MOTIF|BASIC DOMAIN:48	myf5_bovin,myf5_bovin,myod_brare,myod_brare,myf5_chick,myf5_chick,myf6_chick,myf6_chick,myod_caebr,myod_caebr,myod_caeel,myod_caeel,myod_chick,myod_chick,myod_cotja,myod_cotja,myod_drome,myod_drome,myf5_human,myf5_human,myf6_human,myf6_human,myod_human,myod_human,myf5_mouse,myf5_mouse,myf6_mouse,myf6_mouse,myod_mouse,myod_mouse,myf5_notvi,myf5_notvi,myo1_oncmy,myo1_oncmy,myo2_oncmy,myo2_oncmy,myod_pig,myod_pig,myf6_rat,myf6_rat,myod_rat,myod_rat,myod_sheep,myod_sheep,myf5_xenla,myf5_xenla,myod_xenla,myod_xenla	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
KKRKRT	8	8	 100	8	100	HOMEOBOX:8	br3a_chick,brn3_chick,un86_caeel,br3a_human,br3b_human,br3a_mouse,br3b_mouse,br3a_rat	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
QNRRxKx[RK][RK][DQE]	110	110	 100	109	99.09	HOMEOBOX:109	hxa5_ambme,scr_apime,h114_brare,hox3_brafl,hx5l_brare,hxb4_brare,hxb5_brare,hxb6_brare,hxc5_brare,hxc6_brare,hxd4_brare,hxa2_chick,hxa4_chick,hxa7_cotja,hxb3_chick,hxb4_chick,hxb5_chick,hxb6_chick,hxd3_chick,hxd4_chick,hxd8_chick,vab7_caeel,hmdf_drome,hmev_drome,hmft_drohy,hmft_drome,hmpb_drome,hmux_drome,hmz1_drome,scr_drome,hxb4_fugru,evx1_human,evx2_human,hxa2_human,hxa3_human,hxa4_human,hxa5_human,hxa6_human,hxa7_human,hxb2_human,hxb3_human,hxb4_human,hxb5_human,hxb6_human,hxb7_human,hxb8_human,hxc4_human,hxc5_human,hxc6_human,hxc8_human,hxd3_human,hxd4_human,hxd8_human,ipf1_human,evx1_mouse,evx2_mouse,gsh2_mouse,gshi_mouse,hxa2_mouse,hxa3_mouse,hxa4_mouse,hxa5_mouse,hxa6_mouse,hxa7_mouse,hxb3_mouse,hxb4_mouse,hxb5_mouse,hxb6_mouse,hxb7_mouse,hxb8_mouse,hxc4_mouse,hxc5_mouse,hxc6_mouse,hxc8_mouse,hxd3_mouse,hxd4_mouse,hxd8_mouse,ipf1_mesau,ipf1_mouse,hxa2_notvi,hxc5_notvi,hxc6_notvi,hxa2_rat,hxa4_rat,hxa5_rat,hxa7_rat,hxb7_rat,hxb8_rat,hxc4_rat,hxc8_rat,hxd3_rat,ipf1_rat,hxa4_sheep,hxa5_salsa,hxa5_sheep,hxa7_sheep,hxb2_salsa,hxc6_sheep,hb7a_xenla,hb7b_xenla,hm8_xenla,hx3_xenla,hxa7_xenla,hxb3_xenla,hxb4_xenla,hxb5_xenla,hxb6_xenla,hxc5_xenla,hxc6_xenla,mix1_xenla	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
KRGRGRPRK	7	7	 100	5	71.42	A.T HOOK:15	t2d1_drome,hmgc_human,hmgi_human,hmgy_human,hmgc_mouse,hmgy_mouse,prh_petcr	Dna binding (signal not in binding domain),In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,Dna binding (signal not in binding domain)
[DE]K[NIF]RR[DEK][STMNQ]	24	24	 100	24	100	ZINC FINGERS:24	gcr_aotna,gcr_cavpo,prgr_chick,andr_human,gcr_human,mcr_human,prgr_human,andr_mouse,gcr_mouse,prgr_mouse,gcr_oncmy,gcr_parol,andr_rabit,andr_rat,gcr_rat,mcr_rat,prgr_rabit,gcr_sagoe,gcr_saibb,prgr_sheep,gcr_tupgb,mcr_tupgb,gcr_xenla,mcr_xenla	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
RRRKKR	10	10	 100	10	100	HOMEOBOX:10	oct1_chick,pdm1_drome,pdm2_drome,pdm2_drovi,oct1_human,oct2_human,oct1_mouse,oct2_mouse,oct2_pig,oct1_xenla	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
RRER[MNQ]Kx{4,8}R[MNQ]RRR	13	13	 100	13	100	BASIC MOTIF|BASIC DOMAIN:13	fos_chick,fos_cypca,fra2_chick,fos_fugru,fos_human,fosb_human,fra2_human,fos_mouse,fosb_mouse,fra2_mouse,fos_rat,fra2_rat,fos_tetfl	In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain,In dna binding domain
#NumProt	NumDnaBindProt	PerDnaBind	NumNlsInDom	PerNlsInDom
657	596	90.71	600	100.67