RKRKKR	29	100	0	br11_brare,brn1_human,brn1_mouse,brn4_human,brn4_mouse,cf1a_drome,chd3_human,hm16_xenla,hm19_xenla,hm20_xenla,oc11_mouse,oc3n_human,oc3n_mouse,oc3n_rat,oct6_human,oct6_mouse,oct6_rat,po3a_xenla,po3b_xenla,pou1_brare,pou1_xenla,pou2_xenla,sgf3_bommo,sk1a_rat,sk1i_rat,zp12_brare,zp23_brare,zp47_brare,zp50_brare nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RKKRKR	3	10	0	hm22_caeel,u2af_caebr,u2af_caeel	nuc,nuc,nuc
RKKRRxR	23	100	0	cx10_mouse,sp10_human,tat_hv112,tat_hv1a2,tat_hv1b1,tat_hv1b5,tat_hv1br,tat_hv1c4,tat_hv1el,tat_hv1h2,tat_hv1jr,tat_hv1ma,tat_hv1mn,tat_hv1nd,tat_hv1oy,tat_hv1pv,tat_hv1rh,tat_hv1s1,tat_hv1s3,tat_hv1sc,tat_hv1y2,tat_hv1z2,tat_hv1z6 nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[KR]KRKK 50     100	0	br11_brare,brn1_human,brn1_mouse,brn4_human,brn4_mouse,cf1a_drome,chd3_human,cx10_mouse,dd16_human,dnl1_mouse,dpoa_schpo,elf1_mouse,h2b_agabi,h2b_caeel,h2b_caimo,h2b_chick,hm16_xenla,hm19_xenla,hm20_xenla,if16_human,lyar_mouse,mcm3_human,mcm3_mouse,oc11_mouse,oc3n_human,oc3n_mouse,oc3n_rat,oct6_human,oct6_mouse,oct6_rat,p53_salir,pang_drome,pap_canal,po3a_xenla,po3b_xenla,pou1_brare,pou1_xenla,pou2_xenla,prh_petcr,sgf3_bommo,sk1a_rat,sk1i_rat,sko1_yeast,sus_drome,t2d1_human,trx_drome,zp12_brare,zp23_brare,zp47_brare,zp50_brare	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RKRKR[KR] 12	100	0	hmp1_bovin,hmp1_human,hmp1_melga,hmp1_mouse,hmp1_oncke,hmp1_oncmy,hmp1_pig,hmp1_rat,hmp1_sheep,hrx_human,pou2_brare,sko1_yeast nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KKRKR[KR]	10	100	0	h2b_drohy,h2b_drome,h2b_patgr,hm22_caeel,po61_human,po61_mouse,po61_rat,pouc_brare,sn22_human,wc1_neucr	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KKRRK	9	100	0	skip_human,t2fa_human,cys3_neucr,rpb1_plafd,h2b_sipnu,h2bo_strpu,h2b1_xenla,h2b2_xenla,spt6_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[RK]R[MS]KxK[KR]	163	100	0	hxa5_ambme,hxa9_ambme,hxb1_ambme,scr_apime,h114_brare,hox3_brafl,hx5l_brare,hxa1_brare,hxb4_brare,hxb5_brare,hxb6_brare,hxc5_brare,hxc6_brare,hxd4_brare,hxda_brare,hxdc_brare,hxa2_chick,hxa4_chick,hxa7_cotja,hxa9_cavpo,hxa9_chick,hxab_chick,hxb1_chick,hxb1_cypca,hxb3_chick,hxb4_chick,hxb5_chick,hxb6_chick,hxd3_chick,hxd4_chick,hxd8_chick,hxd9_chick,hxda_chick,hxdb_chick,hxdc_chick,vab7_caeel,hmab_drome,hmdf_drome,hmdl_drome,hmev_drome,hmft_drohy,hmft_drome,hmla_drome,hmpb_drome,hmux_drome,hmz1_drome,hmz2_drome,scr_drome,hxa9_fugru,hxb4_fugru,hxc9_fugru,evx1_human,evx2_human,hb9_human,hxa1_human,hxa2_human,hxa3_human,hxa4_human,hxa5_human,hxa6_human,hxa7_human,hxa9_human,hxaa_human,hxab_human,hxb1_human,hxb2_human,hxb3_human,hxb4_human,hxb5_human,hxb6_human,hxb7_human,hxb8_human,hxb9_human,hxc4_human,hxc5_human,hxc6_human,hxc8_human,hxc9_human,hxcb_human,hxcc_human,hxd3_human,hxd4_human,hxd8_human,hxd9_human,hxda_human,hxdb_human,hxdc_human,ipf1_human,evx1_mouse,evx2_mouse,hxa1_mouse,hxa2_mouse,hxa3_mouse,hxa4_mouse,hxa5_mouse,hxa6_mouse,hxa7_mouse,hxa9_mouse,hxaa_mouse,hxab_mouse,hxb1_mouse,hxb3_mouse,hxb4_mouse,hxb5_mouse,hxb6_mouse,hxb7_mouse,hxb8_mouse,hxb9_mouse,hxc4_mouse,hxc5_mouse,hxc6_mouse,hxc8_mouse,hxc9_mouse,hxca_mouse,hxcb_mouse,hxcc_mouse,hxd1_mouse,hxd3_mouse,hxd4_mouse,hxd8_mouse,hxd9_mouse,hxda_mouse,hxdb_mouse,hxdc_mouse,ipf1_mesau,ipf1_mouse,hxa2_notvi,hxc5_notvi,hxc6_notvi,hxdb_notvi,hxb8_pig,hxa2_rat,hxa4_rat,hxa5_rat,hxa7_rat,hxb7_rat,hxb8_rat,hxc4_rat,hxc8_rat,hxd3_rat,ipf1_rat,hxa4_sheep,hxa5_salsa,hxa5_sheep,hxa7_sheep,hxb2_salsa,hxc6_sheep,hxc9_sheep,hb7a_xenla,hb7b_xenla,hm8_xenla,hx3_xenla,hxa1_xenla,hxa7_xenla,hxb3_xenla,hxb4_xenla,hxb5_xenla,hxb6_xenla,hxb9_xenla,hxc5_xenla,hxc6_xenla,hxd1_xenla,pr05_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
PK[KR][KRP][RAK][KT][VSE]	12	100	0	hmin_drome,tdg_mouse,tala_povba,tala_povbk,tala_povbo,tala_povjc,tala_povly,tala_sv40,h1a_xenla,h1b_xenla,h1c1_xenla,h1c2_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KR[MNSQ]R[MNSQ]R	27	100	0	ap1_chick,ap1_cotja,rxra_chick,u2af_caebr,u2af_caeel,ap1_drome,usp_drome,h1l6_ensmi,ap1_human,ddx8_human,rxra_human,rxrb_human,rxrg_human,sfr3_human,ap1_mouse,rxra_mouse,rxrb_mouse,rxrg_mouse,usp_manse,ap1_pig,ap1_rat,rrxb_rat,rxra_rat,ap1_serca,rxra_xenla,rxrg_xenla,pop1_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
T[PLV]KRC	18	100	0	myf5_bovin,myod_brare,myf5_chick,myod_chick,myod_cotja,myf5_human,myod_human,mpi3_mesau,myf5_mouse,myod_mouse,myf5_notvi,myo1_oncmy,mpi3_pig,myod_pig,myod_rat,cut1_schpo,myod_sheep,myf5_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[DE][ST][PL]KR[STC]	16	100	0	myf5_bovin,myod_brare,myf5_chick,myod_chick,myod_cotja,dif_drome,myf5_human,myod_human,myf5_mouse,myod_mouse,myf5_notvi,myo1_oncmy,myod_pig,myod_rat,myod_sheep,myf5_xenla	nuc,nuc,nuc,nuc,nuc,cyt,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRKx{3,5}R[DE]R{3,}?[PLV]	24	100	0	myf5_bovin,myod_brare,myf5_chick,myf6_chick,myod_caebr,myod_caeel,myod_chick,myod_cotja,myod_drome,myf5_human,myf6_human,myod_human,myf5_mouse,myf6_mouse,myod_mouse,myf5_notvi,myo1_oncmy,myo2_oncmy,myod_pig,myf6_rat,myod_rat,myod_sheep,myf5_xenla,myod_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[ED]R{4,}?[ED]		13	100	0	nr54_human,psf_human,usf1_human,usf2_human,ve2_hpv37,ve2_hpv48,usf1_mouse,usf2_mouse,usf1_rabit,usf2_rat,usf_strpu,usf1_xenbo,cbf1_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R{2,}?[QMN]R{3,}?	57	100	0	hsp2_bovin,rev_hv112,rev_hv1a2,rev_hv1b1,rev_hv1b8,rev_hv1bn,rev_hv1br,rev_hv1c4,rev_hv1el,rev_hv1h2,rev_hv1j3,rev_hv1jr,rev_hv1lw,rev_hv1ma,rev_hv1mn,rev_hv1nd,rev_hv1oy,rev_hv1pv,rev_hv1rh,rev_hv1s1,rev_hv1s3,rev_hv1sc,rev_hv1w2,rev_hv1y2,rev_hv1z2,rev_hv1z6,rev_hv1z8,rev_hv2be,rev_hv2ca,rev_hv2d1,rev_hv2g1,rev_hv2kr,rev_hv2nz,rev_hv2ro,rev_hv2sb,rev_hv2st,tat_hv112,tat_hv1a2,tat_hv1b1,tat_hv1b5,tat_hv1br,tat_hv1c4,tat_hv1h2,tat_hv1jr,tat_hv1ma,tat_hv1mn,tat_hv1oy,tat_hv1pv,tat_hv1s1,tat_hv1sc,tat_hv1y2,tat_hv1z2,tat_hv1z6,ve2_hpv17,rev_sivcz,rev_sivm2,rev_sivmk	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
K{1,}?R{2,}?[QM]R{2,}	21	100	0	rev_hv1j3,tat_hv112,tat_hv1a2,tat_hv1b1,tat_hv1b5,tat_hv1br,tat_hv1c4,tat_hv1el,tat_hv1h2,tat_hv1jr,tat_hv1ma,tat_hv1mn,tat_hv1nd,tat_hv1oy,tat_hv1pv,tat_hv1rh,tat_hv1s1,tat_hv1sc,tat_hv1y2,tat_hv1z2,tat_hv1z6	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R{2,}?PR{3,}?	2	100	0	prt3_clupa,hsp1_orcor	nuc,nuc
# Motifs found using Pratt. Can still be experimented upon
RRx{0,1}RRRRR   56      100     0       hsp1_antla,hsp1_antst,hsp1_antsw,prt_antgr,prta_acist,prtb_acigu,gatb_bommo,hsp1_bovin,hsp2_bovin,cdp_canfa,hsp1_caefu,hsp_chick,hsp_cotja,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,ebn6_ebv,hsp1_horse,hsp2_horse,hsp3_horse,rev_hv2be,rev_hv2d1,rev_hv2kr,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_mouse,hsp1_murlo,hsp2_mouse,hsp1_notty,prt3_oncmy,prt4_oncmy,prt7_oncmy,prt9_oncmy,prtb_oncmy,hsp1_parbi,hsp1_pig,hsp1_psecu,hsp2_pig,hsp1_rabit,hsp1_rat,h2b1_strpu,h2b2_strpu,hsp1_sagim,hsp1_sarha,hsp1_sheep,prt1_sepof,prt2_sepof,prt3_scyca,rev_sivs4,rev_sivsp,hsp1_tacac,hsp1_trivu  nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RxRSRSx{0,1}RxR 52      100     0       hsp1_antla,hsp1_antst,hsp1_antsw,stp2_bovin,ve2_bpv4,hsp1_caefu,hsp2_calja,hsp_chick,hsp_cotja,sfr2_chick,u2af_caebr,u2af_caeel,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,sr55_drome,trsf_drome,u2af_drome,em1_ensmi,h1l6_ensmi,ddx8_human,sfr1_human,sfr2_human,sfr5_human,sfr6_human,sfr7_human,u2ag_human,ve2_hpv05,ve2_hpv08,ve2_hpv14,ve2_hpv17,ve2_hpv25,ve2_hpv37,ve2_hpv47,ve2_hpv49,ve2_hpv5b,hsp1_isoma,h1l_mytca,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_murlo,hsp1_notty,hsp1_parbi,hsp1_pergu,hsp1_psecu,sfr6_rabit,hsp1_sarha,hsp1_trivu  nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
Rx{2,3}RRRRRR   69      100     0       hsp1_alose,hsp1_antla,hsp1_antst,hsp1_antsw,prt_antgr,prtb_acigu,gatb_bommo,hsp1_bovin,hsp2_bovin,prt1_bufja,prt2_bufja,cdp_canfa,hsp1_caefu,hsp1_cavpo,hsp2_calja,hsp_chick,hsp_cotja,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,ebn6_ebv,hsp1_gorgo,hsp1_horse,hsp1_human,hsp2_horse,hsp3_horse,rev_hv2be,rev_hv2d1,ve2_hpv37,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_mouse,hsp1_murlo,hsp2_macmu,hsp2_macne,hsp1_notty,prt1_oncke,prt5_oncmy,prt6_oncmy,prt7_oncmy,prt8_oncmy,prt9_oncmy,h2b2_paran,h2b3_paran,hsp1_parbi,hsp1_phaci,hsp1_pig,hsp1_plagi,hsp1_plain,hsp1_plate,hsp1_psecu,hsp2_pig,hsp1_rabit,hsp1_rat,h2b2_strpu,hsp1_sagim,hsp1_sarha,hsp1_sheep,prt1_sepof,prt2_salir,prt2_sepof,prt3_salir,prt3_scyca,hsp1_tacac,hsp1_trivu   nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRRRRRx{0,2}R   64      100     0       hsp1_alose,hsp1_antla,hsp1_antst,hsp1_antsw,prt_antgr,prta_acist,prtb_acigu,gatb_bommo,hsp1_bovin,hsp2_bovin,cdp_canfa,hsp1_caefu,hsp1_cavpo,hsp2_calja,hsp_chick,hsp_cotja,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,ebn6_ebv,hsp1_horse,hsp2_horse,hsp3_horse,rev_hv2be,rev_hv2d1,ve2_hpv37,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_mouse,hsp1_murlo,hsp2_macmu,hsp2_macne,hsp1_notty,prt1_oncke,prt5_oncmy,prt6_oncmy,prt7_oncmy,prt8_oncmy,prt9_oncmy,hsp1_parbi,hsp1_phaci,hsp1_plams,hsp1_psecu,hsp2_pig,hsp1_rabit,hsp1_rat,h2b1_strpu,h2b2_strpu,hsp1_sagim,hsp1_sarha,hsp1_sheep,prt1_sepof,prt2_salir,prt2_sepof,prt3_salir,prt3_scyca,rev_sivs4,rev_sivsp,hsp1_tacac,hsp1_trivu        nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KKKKR[KR]	8	100	0	h2b_anoga,h2b_drohy,h2b_drome,pang_drome,nnp1_human,lef1_mouse,h2b_pladu,t2fa_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KKKR[KR][VPL]	8	100	0	tat_hv1u4,tala_povba,tala_povbk,tala_sv40,orc2_yeast,t2d1_drome,t2d1_human,zfy_human	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[MNQ]RRRRxR	35	100	0	hsp2_bovin,hsp1_droau,rev_hv112,rev_hv1a2,rev_hv1b1,rev_hv1b8,rev_hv1bn,rev_hv1br,rev_hv1c4,rev_hv1el,rev_hv1h2,rev_hv1j3,rev_hv1jr,rev_hv1lw,rev_hv1ma,rev_hv1mn,rev_hv1nd,rev_hv1oy,rev_hv1pv,rev_hv1rh,rev_hv1s1,rev_hv1s3,rev_hv1sc,rev_hv1w2,rev_hv1y2,rev_hv1z2,rev_hv1z6,rev_hv1z8,rev_hv2be,rev_hv2ca,rev_hv2d1,rev_hv2g1,rev_sivcz,rev_sivm2,rev_sivmk	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[KR]RRRRxR	41	100	0	hsp1_antla,hsp1_antst,hsp1_antsw,prt_antgr,gatb_bommo,hsp1_bovin,cdp_canfa,hsp1_caefu,hsp_cotja,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,hsp1_horse,ve2_hpv37,atf3_mouse,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_mouse,hsp1_murlo,hsp1_notty,prt7_oncmy,prt9_oncmy,hsp1_parbi,hsp1_phaci,hsp1_psecu,hsp1_rabit,hsp1_rat,hsp1_sarha,hsp1_sheep,prt1_sepof,prt2_scyca,prt2_sepof,prt3_scyca,rev_sivs4,rev_sivsp,hsp1_tacac,hsp1_trivu	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[GVLIP]RRRRxR	8	100	0	prt_antgr,hsp1_droau,ebn6_ebv,hsp2_horse,hsp3_horse,hsp1_pig,hsp1_psecu,hsp1_sagim	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
# somewhat redundant sets.
RRRRRR	81	100	0	hsp1_alose,hsp1_antla,hsp1_antst,hsp1_antsw,prt_antgr,prta_acist,prtb_acigu,gatb_bommo,hsp1_bovin,hsp2_bovin,prt1_bufja,prt2_bufja,cdp_canfa,hsp1_caefu,hsp1_cavpo,hsp2_calja,hsp_chick,hsp_cotja,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,ebn6_ebv,hsp1_gorgo,fre4_human,hsp1_horse,hsp1_human,hsp1_hylla,hsp2_horse,hsp3_horse,rev_hv2be,rev_hv2d1,ve2_hpv37,h2b2_lytpi,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_mouse,hsp1_murlo,hsp2_macmu,hsp2_macne,hsp1_notty,prt1_oncke,prt5_oncmy,prt6_oncmy,prt7_oncmy,prt8_oncmy,prt9_oncmy,h2b1_paran,h2b2_paran,h2b3_paran,hsp1_parbi,hsp1_phaci,hsp1_pig,hsp1_plagi,hsp1_plain,hsp1_plams,hsp1_plate,hsp1_psecu,hsp2_pig,hsp1_rabit,hsp1_rat,h2b1_strpu,h2b2_strpu,hsp1_sagim,hsp1_sarha,hsp1_sheep,prt1_salir,prt1_sepof,prt2_salir,prt2_scyca,prt2_sepof,prt3_salir,prt3_scyca,rev_sivs4,rev_sivsp,hsp1_tacac,hsp1_trivu,mcm2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RxRRRRRR	45	100	0	hsp1_alose,hsp1_antla,hsp1_antst,hsp1_antsw,prt_antgr,gatb_bommo,hsp1_bovin,hsp2_bovin,cdp_canfa,hsp1_caefu,hsp1_cavpo,hsp_chick,hsp_cotja,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,ebn6_ebv,hsp1_horse,hsp1_human,hsp1_hylla,rev_hv2be,rev_hv2d1,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_mouse,hsp1_murlo,hsp1_notty,hsp1_parbi,hsp1_pig,hsp1_psecu,hsp1_rabit,hsp1_rat,hsp1_sagim,hsp1_sarha,hsp1_sheep,prt1_sepof,prt2_scyca,prt2_sepof,prt3_scyca,hsp1_tacac,hsp1_trivu	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRRRRRxR	39	100	0	hsp1_antla,hsp1_antst,hsp1_antsw,prt_antgr,gatb_bommo,hsp1_bovin,cdp_canfa,hsp1_caefu,hsp_cotja,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,hsp1_horse,ve2_hpv37,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_mouse,hsp1_murlo,hsp1_notty,prt7_oncmy,prt9_oncmy,hsp1_parbi,hsp1_phaci,hsp1_psecu,hsp1_rabit,hsp1_rat,hsp1_sarha,hsp1_sheep,prt1_sepof,prt2_sepof,prt3_scyca,rev_sivs4,rev_sivsp,hsp1_tacac,hsp1_trivu	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRRRRRR	40	100	0	hsp1_antla,hsp1_antst,hsp1_antsw,prt_antgr,prta_acist,prtb_acigu,gatb_bommo,hsp1_bovin,cdp_canfa,hsp1_caefu,hsp_chick,hsp_cotja,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,ebn6_ebv,hsp1_horse,rev_hv2be,rev_hv2d1,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_murlo,hsp1_notty,hsp1_parbi,hsp1_psecu,h2b1_strpu,h2b2_strpu,hsp1_sarha,hsp1_sheep,prt1_sepof,prt2_sepof,prt3_scyca,rev_sivs4,rev_sivsp,hsp1_tacac,hsp1_trivu	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRRRRxRR	37	100	0	hsp1_antst,prt_antgr,gatb_bommo,hsp1_bovin,cdp_canfa,hsp1_caefu,hsp2_calja,hsp_cotja,hsp1_didma,hsp1_horse,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_mouse,prt2_mugja,hsp1_notty,hsp1_ornan,prt7_oncmy,prt9_oncmy,hsp1_phaci,hsp1_psecu,hsp2_pig,prt_perfv,hsp1_rabit,hsp1_rat,hsp1_sheep,prt1_saror,prt1_sepof,prt2_salir,prt2_sepof,prt3_scyca,hsp1_tacac,hsp1_trivu,prt1_thuth,prt2_thuth	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRxRRRRR	35	100	0	hsp1_antst,prt_antgr,gatb_bommo,hsp1_bovin,hsp2_bovin,cdp_canfa,hsp1_caefu,hsp_cotja,hsp1_didma,hsp1_droau,hsp1_horse,hsp2_horse,hsp3_horse,rev_hv2be,rev_hv2d1,rev_hv2kr,hsp1_mouse,hsp2_mouse,prt3_oncmy,prt4_oncmy,prt7_oncmy,prt9_oncmy,prtb_oncmy,hsp1_pig,hsp1_psecu,hsp2_pig,hsp1_rabit,hsp1_rat,hsp1_sagim,hsp1_sheep,prt1_sepof,prt2_sepof,prt3_scyca,hsp1_tacac,hsp1_trivu	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
#[KR] motifs excluding only K motifs which appear to be quite frequent
#in CYTOPLASMIC proteins. 
[KR][KR][KR][KR][KR][KR][KR]	74	100	0	h2b_astru,hsp1_antla,hsp1_antst,hsp1_antsw,prt_antgr,prta_acist,prtb_acigu,gatb_bommo,hsp1_bovin,cdp_canfa,hm22_caeel,hsp1_caefu,hsp_chick,hsp_cotja,brm_drome,h2b_drohy,h2b_drome,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,pang_drome,sus_drome,ebn6_ebv,dd16_human,gcf_human,hsp1_horse,rev_hv2be,rev_hv2d1,sn22_human,sp10_human,t2d1_human,t2fa_human,h2b2_lytpi,cx10_mouse,h2b_margl,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_murlo,lef1_mouse,hsp1_notty,wc1_neucr,h2b1_paran,h2b2_paran,h2b3_paran,h2b_patgr,h2b_pladu,hsp1_parbi,hsp1_psecu,prh_petcr,rpb1_plafd,dkc1_rat,fre6_rat,h2b1_strpu,h2b2_strpu,h2b_sipnu,h2bl_strpu,h2bn_strpu,h2bo_strpu,hmgh_strpu,hsp1_sarha,hsp1_sheep,prt1_sepof,prt2_scyca,prt2_sepof,prt3_scyca,rev_sivs4,rev_sivsp,hsp1_tacac,hsp1_trivu,h2b_ureca	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KKKKKK[PLVI]K	5	0	100	hs9a_chick,hs9a_crigr,hs9a_human,hs9a_mouse,hs9a_pig	cyt,cyt,cyt,cyt,cyt
#[KR][KR][KR][KR][KR][KR]	222	95.4954954954955	4.5045045045045
#6 [KR] motif might be useful as a prefilter in prediction
RRxxKRK	25	100	0	h2b_acrfo,vdr_bovin,vdr_chick,vdr_cotja,elf1_drome,t2fa_drome,twst_drome,dnl4_human,ets1_human,ets2_human,moz_human,rag1_human,vdr_human,ve2_hpv48,ets2_lytva,ets1_mouse,ets2_mouse,vdr_mouse,ets1_rat,vdr_rat,et1a_xenla,et1b_xenla,et2a_xenla,et2b_xenla,vdr_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[KR]{2,3}xxKR[KR][QLM]	31	100	0	ctcf_chick,tha_chick,thb_chick,elf1_drome,ak95_human,ctcf_human,nol1_human,tha1_human,tha2_human,thb1_human,thb2_human,ve1_hpv33,ve2_hpv48,mx1_mouse,tha1_mouse,tha2_mouse,thb1_mouse,thb2_mouse,ak95_rat,mx1_rat,tha2_rat,tha_ranca,thb1_rat,thb2_rat,thb_ranca,cc21_schpo,tha1_sheep,thb1_sheep,thaa_xenla,thab_xenla,pus4_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RR[TS]x[QK][KR][KN]	35	100	0	vdr_bovin,tha_chick,thb_chick,vdr_chick,vdr_cotja,dnl4_human,rrb2_human,rrg1_human,rrg2_human,tha1_human,tha2_human,thb1_human,thb2_human,vdr_human,rra_mouse,rrb_mouse,rrg1_mouse,rrg2_mouse,tha1_mouse,tha2_mouse,vdr_mouse,rra_notvi,rrb_notvi,tha2_rat,tha_ranca,thb_ranca,vdr_rat,tha1_sheep,thb1_sheep,rra_xenla,rrg1_xenla,rrg2_xenla,thaa_xenla,thab_xenla,vdr_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KRxRxRx{2,6}RKRK	16	100	0	ap1_chick,ap1_cotja,junb_cypca,jund_chick,ap1_drome,ap1_human,junb_human,jund_human,ap1_mouse,junb_mouse,jund_mouse,ap1_pig,ap1_rat,junb_rat,jund_rat,ap1_serca	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KKKKKx{3,6}KK	11	100	0	t2d2_drome,t2fa_drome,atrx_human,chd4_human,rdp_human,ssrp_human,rdp_mouse,ssrp_mouse,ssrp_rat,ra16_yeast,sen1_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RGRGRGRGRGRG	3	100	0	ebn2_ebv,smd1_human,snf2_yeast	nuc,nuc,nuc
RxRxRxRxRxRxK	7	100	0	ebn2_ebv,ddx8_human,sfr5_human,ve2_hpv05,ve2_hpv14,ve2_hpv5b,rdp_mouse	nuc,nuc,nuc,nuc,nuc,nuc,nuc
RxRxRxRxRxR	74	97.2972972972973	2.7027027027027	hsp1_alose,hsp1_antla,hsp1_antst,hsp1_antsw,hsp1_bovin,hsp1_caefu,hsp_cotja,sfr2_chick,u2af_caebr,u2af_caeel,dab_drome,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,sr55_drome,stc_drome,trsf_drome,u2af_drome,ebn1_ebv,ebn2_ebv,ddx8_human,hsp1_horse,hsp1_human,rdp_human,sfr1_human,sfr2_human,sfr5_human,sfr6_human,smd1_human,u2ag_human,ve2_hpv05,ve2_hpv08,ve2_hpv14,ve2_hpv17,ve2_hpv25,ve2_hpv49,ve2_hpv5b,hsp1_isoma,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_mouse,hsp1_murlo,hsp2_mouse,rdp_mouse,hsp1_notty,hsp1_orcor,hsp1_ornan,prt7_oncmy,prt9_oncmy,hsp1_pantr,hsp1_parbi,hsp1_pergu,hsp1_psecu,hsp2_pig,hsp1_rabit,hsp1_rat,vtnc_rabit,hsp1_sagim,hsp1_sarha,hsp1_sheep,prt1_sepof,prt2_sepof,prt3_scyca,rev_sivag,rev_sivai,rev_sivat,rev_sivs4,rev_sivsp,hsp1_trivu,snf2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,cyt,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,ext,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[GAPLV]RKRKKR	29	100	0	chd3_human,br11_brare,pou1_brare,sgf3_bommo,zp12_brare,zp23_brare,zp47_brare,zp50_brare,cf1a_drome,brn1_human,brn4_human,oc3n_human,oct6_human,brn1_mouse,brn4_mouse,oc11_mouse,oc3n_mouse,oct6_mouse,oc3n_rat,oct6_rat,sk1a_rat,sk1i_rat,hm16_xenla,hm19_xenla,hm20_xenla,po3a_xenla,po3b_xenla,pou1_xenla,pou2_xenla nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRRKKR	10	100	0	oct1_chick,pdm1_drome,pdm2_drome,pdm2_drovi,oct1_human,oct2_human,oct1_mouse,oct2_mouse,oct2_pig,oct1_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RKx{7,12}RK[STMNQ]KK	16	100	0	gcr_aotna,gcr_cavpo,aant_hdvit,aant_hdvl1,aant_hdvna,aant_hdvwo,gcr_human,gcr_mouse,gcr_oncmy,gcr_parol,gcr_rat,gcr_sagoe,gcr_saibb,gcr_tupgb,gcr_xenla,rox1_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KRKx{2,4}DRRK	21	100	0	myf5_bovin,myod_brare,myf5_chick,myf6_chick,myod_chick,myod_cotja,myf5_human,myf6_human,myod_human,myf5_mouse,myf6_mouse,myod_mouse,myf5_notvi,myo1_oncmy,myo2_oncmy,myod_pig,myf6_rat,myod_rat,myod_sheep,myf5_xenla,myod_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[GA][IVLP]KRR	7	100	0	bimb_emeni,arnt_human,arnt_mouse,arnt_rabit,arnt_rat,rag1_rabit,smd3_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[IVLP][IVLP]KRR	10	100	0	cbfb_human,npl1_human,sp10_human,hap2_klula,cbfb_mouse,h2b2_paran,h2b3_paran,cbfb_rat,php2_schpo,hap2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRER[MNQ]Kx{4,8}R[MNQ]RRR	13	100	0	fos_chick,fos_cypca,fra2_chick,fos_fugru,fos_human,fosb_human,fra2_human,fos_mouse,fosb_mouse,fra2_mouse,fos_rat,fra2_rat,fos_tetfl	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RER[MNQ]Kx{4,8}R[MNQ]RR	16	100	0	fos_chick,fos_cypca,fra2_chick,fos_fugru,fos_human,fosb_human,fra1_human,fra2_human,fos_mouse,fosb_mouse,fra1_mouse,fra2_mouse,fos_rat,fra1_rat,fra2_rat,fos_tetfl	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KKxRx{3,5}R[PVL]K	4	100	0	dpoa_human,dpoa_mouse,dpoa_rat,ly14_yeast	nuc,nuc,nuc,nuc
R[MNQ]x{4,8}R[MNQ]RR	26	100	0	area_aspor,hsp2_bovin,fos_chick,fos_cypca,fra2_chick,fos_fugru,atf5_human,cebg_human,fos_human,fosb_human,fra1_human,fra2_human,mycn_human,rev_hv1c4,ve2_hpv17,ve2_hpv25,cebg_mouse,fos_mouse,fosb_mouse,fra1_mouse,fra2_mouse,cebg_rat,fos_rat,fra1_rat,fra2_rat,fos_tetfl	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KKx{5,7}K[PL][PLIV]KK	11	100	0	h2b_arath,tp2a_crigr,ddx5_human,p15_human,tp2a_human,p15_mouse,tp2a_mouse,p15_rat,tp2a_rat,h1_tetpy,tfs2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuRNRYRKLEc,nuc,nuc,nuc
DE]R{2,4}xRK[PL]	4	100	0	tp2a_crigr,tp2a_human,tp2a_mouse,tp2a_rat	nuc,nuc,nuc,nuc
KRKx{0,8}KR[PL]K	3	100	0	ku70_human,orc1_klula,prt4_scyca	nuc,nuc,nuc
KRKx{5,10}KK[PL]K	6	100	0	hrx_human,rag1_human,ku70_mouse,rag1_mouse,h1_paran,cych_xenla	nuc,nuc,nuc,nuc,nuc,nuc
KKx{1,5}K[PL][PLIV]KK	7	100	0	h2b_arath,p15_human,p15_mouse,h1_psami,p15_rat,h1e_strpu,h1_tetpy	nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[STCMNQ]R[STCMNQ]KR	5	100	0	atfa_human,crep_human,atf2_mouse,atf2_rat,b7_ustma	nuc,nuc,nuc,nuc,nuc
KK[MNQSTC]R[MNQSTC]K[MNQSTC]	12	100	0	ppar_cavpo,ppar_human,ppas_human,ppat_human,ppar_mouse,ppas_mouse,ppat_mouse,ppar_rat,ppat_rabit,ppar_xenla,ppas_xenla,ppat_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RR[PLIV]RKxK	3	100	0	hp1_drome,hp1_drovi,moz_human	nuc,nuc,nuc
RRxKRxK[PLV]	7	100	0	sdc3_caeel,fd4_drome,hn3g_human,fkh4_mouse,fkh5_mouse,hn3g_mouse,hn3g_rat	nuc,nuc,nuc,nuc,nuc,nuc,nuc
[PL]KxxKRR	19	100	0	e2f1_chick,hm18_caeel,ve1_ccpv1,suhw_droan,e2f1_human,e2f3_human,npl4_human,sn22_human,ve1_hpv11,ve1_hpv44,ve1_hpv6a,ve1_hpv6b,hsf3_lycpe,e2f1_mouse,e2f3_mouse,npl1_mouse,ve1_pcpv1,e2f1_rat,ly14_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[DE]KxRRK[MNQ]	23	100	0	gcr_aotna,prgr_chick,andr_human,gcr_human,mcr_human,prgr_human,andr_mouse,gcr_mouse,prgr_mouse,gcr_oncmy,gcr_parol,andr_rabit,andr_rat,gcr_rat,mcr_rat,prgr_rabit,gcr_sagoe,gcr_saibb,prgr_sheep,gcr_tupgb,mcr_tupgb,gcr_xenla,mcr_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[DE]K[NIF]RR[DEK][STMNQ]	24	100	0	gcr_aotna,gcr_cavpo,prgr_chick,andr_human,gcr_human,mcr_human,prgr_human,andr_mouse,gcr_mouse,prgr_mouse,gcr_oncmy,gcr_parol,andr_rabit,andr_rat,gcr_rat,mcr_rat,prgr_rabit,gcr_sagoe,gcr_saibb,prgr_sheep,gcr_tupgb,mcr_tupgb,gcr_xenla,mcr_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[YFW]RRRR[PL]	8	100	0	yb1_chick,rxrb_human,tfe3_human,yb1_human,rxrb_mouse,yb1_mouse,yb1_xenla,yb3_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RKR[PLQMN]R[PLQMN]R	16	100	0	ap1_chick,ap1_cotja,junb_cypca,jund_chick,ap1_drome,ap1_human,junb_human,jund_human,ap1_mouse,junb_mouse,jund_mouse,ap1_pig,ap1_rat,junb_rat,jund_rat,ap1_serca	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
K[PLMN]RRK[MNQ]	3	100	0	sx19_brare,slp1_drome,son1_yeast	nuc,nuc,nuc
RR[PLQMN]xRRRR	10	100	0	hsp2_bovin,yb1_chick,hsp2_horse,hsp3_horse,rev_hv2be,rev_hv2d1,rev_hv2kr,yb1_human,yb1_mouse,prt5_oncmy	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RxKKKK[DE]	12	100	0	rrb2_human,rrg1_human,rrg2_human,rra_mouse,rrb_mouse,rrg1_mouse,rrg2_mouse,u2r1_mouse,rrb_notvi,rra_xenla,rrg1_xenla,rrg2_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[DE]RxKKKK	15	100	0	ssrp_chick,t2d4_drome,ddx8_human,rrb2_human,rrg1_human,rrg2_human,rra_mouse,rrb_mouse,rrg1_mouse,rrg2_mouse,rra_notvi,rrb_notvi,rra_xenla,rrg1_xenla,rrg2_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRxR[PVL]RK	13	100	0	gbf1_arath,gbf2_arath,gbf3_arath,gsbd_drome,gsbp_drome,hmpr_drome,moz_human,ocs1_maize,cpr1_petcr,cpr3_petcr,taf1_tobac,emp1_wheat,hbpa_wheat	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRR[LP]xxR[PLQ]	6	100	0	zfx_bovin,tra1_caeel,zfx_human,zfx1_mouse,zfx2_mouse,ra54_yeast	nuc,nuc,nuc,nuc,nuc,nuc
[DE]RKRR[DEPLQ]	15	100	0	max_brare,max_chick,brm_drome,trsf_drome,max_human,sn22_human,sn24_human,wrn_human,max_mouse,scp1_mesau,max_rat,scp1_rat,mlh_tetth,max_xenla,dpoe_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[KR][DE][KR][DE]xx[KR]{4,}?	5	100	0	tala_bfdv,aant_hdvs1,aant_hdvs2,cenc_human,snf5_yeast	nuc,nuc,nuc,nuc,nuc
[PL]R[DE]K[DE]R	2	100	0	dp30_caeel,mpi3_mouse	nuc,nuc
[PLV]KKKRK[PLV]	3	100	0	tala_povba,tala_povbk,tala_sv40	nuc,nuc,nuc
[PLV]KKKKK[PLV]	2	100	0	chd4_human,tala_povjc	nuc,nuc
[PLV]R{5,7}[PLV]	9	100	0	h1l6_ensmi,prt1_esolu,prt1_oncke,prt2_oncmy,prt5_oncmy,prt6_oncmy,prt9_oncmy,prtb_oncmy,prt2_salir	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[PLV]K{5,7}[PLV]	2	100	0	chd4_human,tala_povjc	nuc,nuc
[PL][KR]{5,7}[PL]	12	100	0	dnb2_ade05,zfx_bovin,myba_chick,chd4_human,zfx_human,zfy_human,mbp1_klula,tdg_mouse,zfx1_mouse,zfx2_mouse,p53_salir,tf3a_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[KR]{2,}?[PL]x{1,4}[KR]{2,}?x{1,5}K{3,}?	11	100	0	h2b_arath,hmga_chite,tf3a_ictpu,phi3_mytca,h1_paran,h1d_strpu,prt4_scyca,h1_tigca,h5a_xenla,h5b_xenla,nupl_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
K[GA]K[AG]KK[AG]	5	100	0	tp2a_crigr,t2fa_drome,tp2a_mouse,cebb_rat,tp2a_rat	nuc,nuc,nuc,nuc,nuc
[KR][KR]x[KR][KR][KR]x[KR][KR]	54	98.1481481481482	1.85185185185185	h2b_agabi,h2b_anoga,prt_antgr,hsp1_bovin,hsp2_bovin,cdp_canfa,hsp1_caefu,brm_drome,hsp1_didma,hsp1_droau,t2d2_drome,twst_drome,rms5_emeni,aant_hdvam,aant_hdvd3,aant_hdvit,aant_hdvl1,aant_hdvm1,aant_hdvm2,aant_hdvna,aant_hdvwo,ell2_human,gcf_human,hsp1_horse,pwp1_human,rev_hv2be,rev_hv2d1,rev_hv2kr,sn22_human,h2b1_maize,h2b2_maize,h2b3_maize,h2b4_maize,h2b5_maize,hsp1_mouse,u2r1_mouse,hsp1_orcor,prt7_oncmy,prt9_oncmy,hsp1_phaci,hsp1_pig,hsp1_psecu,rpb1_plafd,hsp1_rabit,hsp1_rat,hsp1_sagim,hsp1_sheep,prt1_sepof,prt2_sepof,prt3_scyca,hsp1_trivu,h2b1_wheat,pr08_yeast,sen1_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,mit,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[RK][PLIV][KR]KK[PLVI]R	1	100	0	ht31_arath	nuc
[RK][PLIV][KR][RK]{2,4}[PLVI]R	5	100	0	ht31_arath,cg2f_human,prt3_oncmy,prt4_oncmy,prtb_oncmy	nuc,nuc,nuc,nuc,nuc
KR[PLV][GA]KRK[PL]	19	100	0	tha_chick,thb_chick,tha1_human,tha2_human,thb1_human,thb2_human,tha1_mouse,tha2_mouse,thb1_mouse,thb2_mouse,tha2_rat,tha_ranca,thb1_rat,thb2_rat,thb_ranca,tha1_sheep,thb1_sheep,thaa_xenla,thab_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[DE][KR]RR[KR][FYW]	6	100	0	crep_human,tfe3_human,tfeb_human,atf2_mouse,tfe3_mouse,atf2_rat	nuc,nuc,nuc,nuc,nuc,nuc
Rx[KR][KR][KR]xxRKKR	2	100	0	dd16_human,sth1_yeast	nuc,nuc
KRxxKKxK[DE]	3	100	0	xpa_chick,chd3_human,snf2_yeast	nuc,nuc,nuc
[DE]KR[MQN]R[MQN]R	13	100	0	rxra_chick,usp_drome,rxra_human,rxrb_human,rxrg_human,rxra_mouse,rxrb_mouse,rxrg_mouse,usp_manse,rrxb_rat,rxra_rat,rxra_xenla,rxrg_xenla nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
DR[MN]KKKKE	11	100	0	rrb2_human,rrg1_human,rrg2_human,rra_mouse,rrb_mouse,rrg1_mouse,rrg2_mouse,rrb_notvi,rra_xenla,rrg1_xenla,rrg2_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RK[PL][PLV]KK[RKH]	5	100	0	tp2b_chick,tp2b_crilo,tp2b_mouse,rap1_yeast,spt5_yeast	nuc,nuc,nuc,nuc,nuc
RK[IVE]W[ML][TQR]N[HF]	9	100	0	tp2a_chick,tp2b_chick,tp2b_crilo,top2_drome,tp2a_human,tp2b_human,tp2a_mouse,tp2b_mouse,tp2a_rat	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[RK]{2,4}[PL][RK][MNQ]R	10	100	0	junb_cypca,jund_chick,hsp1_droau,junb_human,jund_human,xbp1_human,junb_mouse,jund_mouse,junb_rat,jund_rat	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R{2,3}K{3,4}[PLRKE]	15	100	0	creb_bovin,creb_chlvr,crem_canfa,bbf2_drome,atf1_human,creb_human,relb_human,atf1_mouse,crea_mouse,creb_mouse,relb_mouse,creb_rat,crem_rat,dpol_rcmvm,orc5_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[KR]{3,4}K[DE]	30	100	0	h2b_astru,creb_bovin,creb_chlvr,crem_canfa,bbf2_drome,sus_drome,atf1_human,atf6_human,crea_human,creb_human,if16_human,zep2_human,atf1_mouse,crea_mouse,creb_mouse,crem_mouse,h2b_margl,h2b3_psami,h2b4_psami,h2b_patgr,creb_rat,crem_rat,h2b_sipnu,h2bl_strpu,h2bn_strpu,h2bo_strpu,hmgh_strpu,orc5_yeast,sko1_yeast,sof1_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
K[MNQ]RR[PLVI]K[PL]	44	100	0	br11_brare,pou1_brare,sgf3_bommo,zp12_brare,zp23_brare,zp47_brare,zp50_brare,brn3_chick,oct1_chick,un86_caeel,cf1a_drome,ipou_drome,pdm1_drome,pdm2_drome,pdm2_drovi,br3a_human,br3b_human,br3c_human,brn1_human,brn4_human,oc3n_human,oct1_human,oct2_human,oct6_human,br3a_mouse,br3b_mouse,br3c_mouse,brn1_mouse,brn4_mouse,oc11_mouse,oc3n_mouse,oct1_mouse,oct2_mouse,oct6_mouse,oct2_pig,oc3n_rat,oct6_rat,sk1a_rat,sk1i_rat,oct1_xenla,po3a_xenla,po3b_xenla,pou1_xenla,pou2_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[GA]KxKKK[MNQ]	3	100	0	tfs2_human,tfs2_mouse,mrf1_yeast	nuc,nuc,nuc
[PVLI][RK][RK][RK][RK][RK][QMN]K	4	100	0	msl1_drome,no56_human,zep1_human,zep1_mouse	nuc,nuc,nuc,nuc
R[GA]x{0,2}[GA]R[GA]x[GA]R[GA]	19	100	0	nucl_chick,ebn1_ebv,ebn2_ebv,ews_human,p80c_human,smd1_human,smd3_human,tfeb_human,fbrl_leima,ews_mouse,fbrl_mouse,nucl_mesau,nfil_pig,5e5_rat,fbrl_rat,fbrl_schpo,nucl_xenla,nsr1_yeast,snf2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[GA][KR]KRx[KR][GA]	11	100	0	dpod_bovin,h2b_caeel,ppol_drome,dpod_human,pmsc_human,dpod_mesau,dpod_mouse,dpod_rat,spm1_rat,dpod_soybn,h2b1_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[RK]K[RK]KR	5	100	0	prh_arath,hm22_caeel,u2af_caebr,u2af_caeel,dpol_rcmvm	nuc,nuc,nuc,nuc,nuc
[PLV]KRx[QMN]RR	14	100	0	wt1_allmi,dp27_caeel,gsbd_drome,gsbp_drome,hmpr_drome,pax3_human,pax7_human,wt1_human,pax3_mouse,pax7_mouse,wt1_mouse,wt1_pig,wt1_rat,wt1_smima	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[PLV]K[RK]x[QMN][RK]R	16	100	0	dnb2_ade05,wt1_allmi,dp27_caeel,gsbd_drome,gsbp_drome,hmpr_drome,pax3_human,pax7_human,wt1_human,pax3_mouse,pax7_mouse,wt1_mouse,wt1_pig,wt1_rat,wt1_smima,nuf1_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[PLQMNKR]K[KR][KR]RxK[PLQMNKR]	5	100	0	h2b_chith,sn22_human,lef1_mouse,u2r1_mouse,rpb1_plafd	nuc,nuc,nuc,nuc,nuc
[PLQMKR]R[KR][QM][KR]RxK	11	100	0	axia_brare,sgf1_bommo,fkh_drome,hn3a_human,hn3g_human,hn3a_mouse,hn3b_mouse,hn3g_mouse,hn3a_rat,hn3b_rat,hn3g_rat	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KRx[DE][KR][KR]xK	2	100	0	xpa_chick,snf2_yeast	nuc,nuc
R[QMPL]RR[DE]R	9	100	0	cebd_human,cebe_human,cebg_human,cebd_mouse,cebg_mouse,cebd_rat,cebe_rat,cebg_rat,u2af_schpo	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[PLV]RK[ST]R[DE]K	14	100	0	cebb_chick,ceb_drome,ceb_drovi,ceba_human,cebb_human,cebd_human,cebe_human,ceba_mouse,cebb_mouse,cebd_mouse,ceba_rat,cebb_rat,cebd_rat,cebe_rat	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[STQM]RKRK[STQM]	7	100	0	prh_arath,elt2_caeel,ga15_crilo,tp2a_crigr,ga15_human,zn46_human,ga15_mouse	nuc,nuc,nuc,nuc,nuc,nuc,nuc
[STQM]RKRR[STQM]	1	100	0	mklp_human	nuc
[STQM]RRRK[STQM]	4	100	0	prt_antgr,ve2_hpv38,cpr2_petcr,msn4_yeast	nuc,nuc,nuc,nuc
[PL][RK][RK]R[GAPL][RK][STQM]	3	100	0	hmux_drome,hmux_drops,ve2_hpv5b	nuc,nuc,nuc
K[KR][QMN][RK]R[QMN]R	4	100	0	hnfb_human,hnfb_mouse,hnfb_pig,hnfb_rat	nuc,nuc,nuc,nuc
[PLQ]K[RK]x{1,2}[RK]x{3,6}[RK][RK]x{1,2}[RK]x{1,2}[RK][RK]	22	100	0	h1_anapl,prt_antgr,h101_chick,h103_chick,h110_chick,h11l_chick,h11r_chick,h1_chick,h1_echcr,h1a_human,moz_human,h11_mouse,h15_mouse,h1l_myttr,phi1_myted,h1_oncmy,h1_paran,h1_saltr,h1e_strpu,h5a_xenla,h5b_xenla,gcn4_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[PL][RK][RK][DEP]R[RK][FYW]	4	100	0	zep2_human,agie_rat,maz3_schco,u2af_schpo	nuc,nuc,nuc,nuc
[KR][KR][QMN]R[RK][QMN]R	6	100	0	hnfb_human,pmx1_human,hnfb_mouse,pmx1_mouse,hnfb_pig,hnfb_rat	nuc,nuc,nuc,nuc,nuc,nuc
[PL][RK][RK]K[GAPL][RK][QM]	5	100	0	sx11_chick,sry_gorgo,sry_horse,sry_human,tala_povmk	nuc,nuc,nuc,nuc,nuc
R[KR][RK]x{0,2}[RK]x{0,2}[RK]x{3,5}[RK]x{0,2}[RK][RK][RK][RK][PMQL]	22	100	0	ap1_chick,ap1_cotja,junb_cypca,jund_chick,prt2_clupa,ap1_drome,ap1_human,hsp2_horse,hsp3_horse,junb_human,jund_human,ap1_mouse,junb_mouse,jund_mouse,prt5_oncmy,prt6_oncmy,ap1_pig,ap1_rat,junb_rat,jund_rat,ap1_serca,prt1_salir	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KR[RK][RK]x{2,4}[RK]x{0,2}Rx{3,5}[RK]x{0,2}[RK]x{0,2}[RK][RK]K	4	100	0	prt_antgr,crep_human,atf2_mouse,atf2_rat	nuc,nuc,nuc,nuc
[RK]{3,}?x{8,16}[RK]{4,}?	193	97.9274611398964	2.07253886010363	hsp1_antla,hsp1_antst,hsp1_antsw,prt_antgr,prta_acist,prtb_acigu,creb_bovin,hsp1_bovin,if2_borbu,pap_bovin,prt1_bufja,prt2_bufja,stp2_bovin,ap1_chick,ap1_cotja,creb_chlvr,crem_canfa,hsp1_caefu,hsp1_cavpo,hsp2_calja,hsp_chick,hsp_cotja,ince_chick,junb_cypca,jund_chick,nucl_chick,prt1_clupa,prt2_clupa,prt3_clupa,ap1_drome,ato_drome,bbf2_drome,brm_drome,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,ssrp_drome,sus_drome,suwa_drome,t2fa_drome,trsf_drome,h1l6_ensmi,nira_emeni,prt1_esolu,hsp2_gorgo,aant_hdvam,aant_hdvd3,aant_hdvit,aant_hdvl1,aant_hdvm1,aant_hdvm2,aant_hdvna,aant_hdvwo,ak95_human,ap1_human,cb80_human,cbf_human,chd3_human,crea_human,creb_human,creb_hydat,crep_human,dpoe_human,gcf_human,hsp1_hylla,hsp2_horse,hsp2_human,hsp2_hylla,hsp3_horse,junb_human,jund_human,moz_human,ngp1_human,nr54_human,psf_human,sfr4_human,sn22_human,sp10_human,t2d1_human,t2fa_human,u2af_human,ve2_hpv04,ve2_hpv41,ve2_hpv60,hsp1_isoma,tf3a_ictpu,ap1_mouse,atf2_mouse,crea_mouse,creb_mouse,crem_mouse,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_mouse,hsp1_murlo,hsp2_macmu,hsp2_macne,hsp2_mouse,ifi3_mouse,junb_mouse,jund_mouse,lyar_mouse,phi1_myted,prt2_mugja,u2af_mouse,hsp1_notty,nit4_neucr,p53_oryla,prt1_oncke,prt2_oncmy,prt3_oncmy,prt4_oncmy,prt5_oncmy,prt6_oncmy,prt7_oncmy,prt8_oncmy,prt9_oncmy,prta_oncmy,prtb_oncmy,a33_plewa,ap1_pig,can3_pig,h2b1_paran,hsp1_parbi,hsp1_pergu,hsp1_phaci,hsp1_pig,hsp1_plagi,hsp1_plain,hsp1_plams,hsp1_plate,hsp1_psecu,hsp2_panpa,hsp2_pantr,hsp2_pig,hsp2_ponpy,prt_perfv,rm14_parte,ak95_rat,ap1_rat,atf2_rat,creb_rat,crem_rat,hsp1_rat,hsp2_rat,junb_rat,jund_rat,ap1_schpo,ap1_serca,h2b1_strpu,hsp1_sagim,hsp1_sarha,hsp1_sheep,prt1_salir,prt1_saror,prt1_scyca,prt1_sepof,prt2_salir,prt2_scyca,prt2_sepof,prt3_salir,prt3_scyca,prt4_scyca,hsp1_tacac,hsp1_trivu,prt1_thuth,prt2_thuth,rm14_tetpy,cych_xenla,pap1_xenla,pap2_xenla,rag1_xenla,sph1_xenla,t2fa_xenla,apn1_yeast,cac1_yeast,cha4_yeast,cyp1_yeast,dbp7_yeast,ly14_yeast,mtr4_yeast,rad5_yeast,reb1_yeast,rok1_yeast,ru1c_yeast,sen1_yeast,sko1_yeast,sof1_yeast,tea1_yeast nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,cyt,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,cyt,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,mit,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,mit,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[RK]{2,4}x{1,2}[RK]x{0,2}[RK]x{3,5}[RK]x{0,2}[RK][RK]{2,4}[PL]	51	100	0	ap1_chick,ap1_cotja,hsp2_calja,irf1_chick,junb_cypca,jund_chick,prt1_clupa,prt2_clupa,yb1_chick,ap1_drome,hsp1_droau,t2fa_drome,ap1_human,cbp_human,hsp2_horse,hsp3_horse,junb_human,jund_human,no56_human,p300_human,sn22_human,ssrp_human,yb1_human,tf3a_ictpu,ap1_mouse,cbp_mouse,irf1_mouse,junb_mouse,jund_mouse,scp1_mesau,yb1_mouse,prt2_oncmy,prt3_oncmy,prt4_oncmy,prt5_oncmy,prt6_oncmy,prta_oncmy,prtb_oncmy,ap1_pig,hsp2_pig,ap1_rat,irf1_rat,junb_rat,jund_rat,scp1_rat,ap1_serca,prt1_salir,prt4_scyca,sss2_scyca,yb1_xenla,yb3_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[RK]{3,}?x{8,16}[RK]{4,}?R	83	100	0	prt_antgr,prta_acist,prtb_acigu,hsp1_bovin,prt1_bufja,prt2_bufja,hsp1_caefu,hsp1_cavpo,hsp2_calja,hsp_chick,hsp_cotja,ato_drome,brm_drome,hsp1_dasvi,hsp1_didma,hsp1_droau,suwa_drome,prt1_esolu,hsp2_gorgo,cbf_human,chd3_human,gcf_human,hsp2_horse,hsp2_human,hsp2_hylla,hsp3_horse,sp10_human,t2d1_human,ve2_hpv04,hsp1_isoma,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_mouse,hsp2_macmu,hsp2_macne,hsp2_mouse,phi1_myted,prt2_mugja,hsp1_notty,prt1_oncke,prt2_oncmy,prt3_oncmy,prt4_oncmy,prt5_oncmy,prt6_oncmy,prt7_oncmy,prt8_oncmy,prt9_oncmy,prta_oncmy,prtb_oncmy,hsp1_pergu,hsp1_phaci,hsp1_plagi,hsp1_plain,hsp1_plate,hsp1_psecu,hsp2_panpa,hsp2_pantr,hsp2_pig,hsp2_ponpy,hsp1_rat,hsp1_sarha,hsp1_sheep,prt1_salir,prt1_saror,prt1_scyca,prt1_sepof,prt2_salir,prt2_scyca,prt2_sepof,prt3_salir,prt3_scyca,hsp1_tacac,hsp1_trivu,prt1_thuth,prt2_thuth,rag1_xenla,t2fa_xenla,mtr4_yeast,rad5_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[RK]x{4,6}[RK][RK]x[RK]x{1,3}[RK][RK][PLQ]	18	100	0	ces2_caeel,h5_caimo,hmgi_human,hmgy_human,nnp1_human,no56_human,tef_human,hmgy_mouse,u2r1_mouse,hsp1_orcor,prt3_oncmy,prt4_oncmy,prtb_oncmy,hsp2_pig,top2_plafk,tef_rat,sss1_scyca,sss2_scyca	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[RK]{3,}?x[RK]x[RK]x{4,9}[RK]{3,}?	88	100	0	hsp1_antst,hsp1_antsw,prt_antgr,hsp1_bovin,ap1_chick,ap1_cotja,hsp1_caefu,hsp_cotja,junb_cypca,jund_chick,prt3_clupa,u2af_caebr,u2af_caeel,ap1_drome,bbf2_drome,hsp1_dasro,hsp1_dasvi,hsp1_didma,hsp1_droau,t2fa_drome,trsf_drome,u2ag_drome,h1l6_ensmi,prt1_esolu,ap1_human,atf3_human,chd3_human,gcf_human,hsp1_horse,junb_human,jund_human,sp10_human,xbp1_human,ap1_mouse,atf3_mouse,hsp1_macag,hsp1_maceu,hsp1_macgi,hsp1_macrg,hsp1_macru,hsp1_mouse,hsp1_murlo,junb_mouse,jund_mouse,prt2_mugja,requ_mouse,hsp1_notty,prt1_oncke,prt2_oncmy,prt3_oncmy,prt4_oncmy,prt5_oncmy,prt6_oncmy,prt7_oncmy,prt8_oncmy,prt9_oncmy,prta_oncmy,prtb_oncmy,ap1_pig,hsp1_parbi,hsp1_phaci,hsp1_pig,hsp1_plagi,hsp1_plain,hsp1_plate,hsp1_psecu,prt_perfv,ap1_rat,hsp1_rabit,hsp1_rat,junb_rat,jund_rat,ap1_serca,hsp1_sagim,hsp1_sarha,hsp1_sheep,prt1_saror,prt1_sepof,prt2_salir,prt2_scyca,prt2_sepof,prt4_scyca,hsp1_trivu,prt1_thuth,prt2_thuth,dbp7_yeast,rad4_yeast,sen1_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[PLV]K[RK]x[RK][RK]KL	4	100	0	h10_human,pu1_human,pu1_mouse,hbpa_wheat	nuc,nuc,nuc,nuc
[GA]Rx[RK]x[RK][RK]x[QM]	14	100	0	apte_drome,eya_drome,hmgc_human,rag1_human,dbx_mouse,hmgc_mouse,cys3_neucr,prh_petcr,rag1_rabit,rev_sivai,rev_sivam,rev_sivgb,dbp7_yeast,dpoe_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[PL][RK]{2,3}K[PLI][RK]x[PLI]xK	2	100	0	ra17_schpo,gcn5_yeast	nuc,nuc
[PLV]K[RK]x[RK][RK][RK][PL]	15	100	0	dnb2_ade05,ve1_ccpv1,h10_human,no56_human,pu1_human,ve1_hpv11,ve1_hpv44,ve1_hpv6a,ve1_hpv6b,h10_mouse,pu1_mouse,tdg_mouse,ve1_pcpv1,h10_rat,hbpa_wheat	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[PL][PL]x[KR]R[DE][KR][QST]	4	100	0	adf1_drome,gat1_human,gat1_mouse,gat1_rat	nuc,nuc,nuc,nuc
[PLQ][KR]x{3,4}KKRK	10	100	0	h2b_caimo,h2b_chick,pap_canal,h2b0_human,h2b_human,h2b1_mouse,h2b2_mouse,lyar_mouse,p53_oryla,hsf_schpo	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[PL]xx[KR]{2,}?xx[KR]V	25	100	0	hsp2_alose,prt1_clupa,prt2_clupa,tf2d_chick,hsp2_horse,hsp3_horse,tf2d_human,tf2d_mesau,tf2d_mouse,prt1_oncke,prt2_oncmy,prt5_oncmy,prt6_oncmy,prt7_oncmy,prt8_oncmy,prt9_oncmy,prta_oncmy,prt1_salir,prt2_salir,prt3_salir,tf2d_strpu,tf2d_trifl,tf2d_triga,tf2d_xenla,est1_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[RK]x[KR]x[RK]{2,}?[DE]	132	100	0	hxa5_ambme,hxb1_ambme,scr_apime,h114_brare,hox3_brafl,hx5l_brare,hxa1_brare,hxb4_brare,hxb5_brare,hxb6_brare,hxc5_brare,hxc6_brare,hxd4_brare,pax6_brare,ctcf_chick,hxa4_chick,hxa7_cotja,hxb1_chick,hxb1_cypca,hxb3_chick,hxb4_chick,hxb5_chick,hxb6_chick,hxd3_chick,hxd4_chick,hxd8_chick,pax6_chick,pax6_cotja,un30_caeel,brm_drome,croc_drome,hmdf_drome,hmft_drohy,hmft_drome,hmux_drome,hmz1_drome,scr_drome,sus_drome,t2d2_drome,hxb4_fugru,ak95_human,cg2f_human,chd3_human,ctcf_human,fre3_human,hxa1_human,hxa3_human,hxa4_human,hxa5_human,hxa6_human,hxa7_human,hxb1_human,hxb3_human,hxb4_human,hxb5_human,hxb6_human,hxb7_human,hxb8_human,hxc4_human,hxc5_human,hxc6_human,hxc8_human,hxd3_human,hxd4_human,hxd8_human,ipf1_human,pax6_human,cx10_mouse,fre3_mouse,gsh2_mouse,gshi_mouse,hxa1_mouse,hxa3_mouse,hxa4_mouse,hxa5_mouse,hxa6_mouse,hxa7_mouse,hxb1_mouse,hxb3_mouse,hxb4_mouse,hxb5_mouse,hxb6_mouse,hxb7_mouse,hxb8_mouse,hxc4_mouse,hxc5_mouse,hxc6_mouse,hxc8_mouse,hxd1_mouse,hxd3_mouse,hxd4_mouse,hxd8_mouse,ipf1_mesau,ipf1_mouse,pax6_mouse,hxc5_notvi,hxc6_notvi,pax6_oryla,dpod_plafk,hxb8_pig,ak95_rat,hxa4_rat,hxa5_rat,hxa7_rat,hxb7_rat,hxb8_rat,hxc4_rat,hxc8_rat,hxd3_rat,ipf1_rat,pax6_rat,h2b1_strpu,h2b2_strpu,hxa4_sheep,hxa5_salsa,hxa5_sheep,hxa7_sheep,hxc6_sheep,hb7a_xenla,hb7b_xenla,hm8_xenla,hxa1_xenla,hxa7_xenla,hxb3_xenla,hxb4_xenla,hxb5_xenla,hxb6_xenla,hxc5_xenla,hxc6_xenla,hxd1_xenla,pax6_xenla,snf2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
Rx[KR][KR]K[PLQM]R	6	100	0	ht31_arath,chd4_human,myba_human,tdg_mouse,cys3_neucr,top2_schpo	nuc,nuc,nuc,nuc,nuc,nuc
K[KR][KR]RR[KR]	28	100	0	h2b_astru,prt_antgr,prta_acist,brm_drome,atrx_human,mcm3_human,sn22_human,ssrp_human,h2b2_lytpi,atrx_mouse,cbf_mouse,h2b_margl,mcm3_mouse,ssrp_mouse,wc1_neucr,h2b1_paran,h2b2_paran,h2b3_paran,h2b_patgr,h2b_pladu,rpb1_plafd,ssrp_rat,h2bl_strpu,h2bn_strpu,hmgh_strpu,prt1_scyca,prt2_scyca,h2b_ureca	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KKRR[DE]K	3	100	0	pop1_caeel,ak95_human,ak95_rat	nuc,nuc,nuc
KKRRxK	12	100	0	h2b_astru,h2b_chith,pop1_caeel,ato_drome,ak95_human,t2eb_human,vbp1_human,hsf8_lycpe,h2b_margl,u2r1_mouse,ak95_rat,h2bn_strpu nuc,nuc,nuc,nuc,nuc,nuc,cyt,nuc,nuc,nuc,nuc,nuc The cytoplasmic protein vbp1_human translocates to the nucleus when bound to vhl.Probably even nuc
Kx[PLV][RK][RK]RK	4	100	0	h1_echcr,stp2_mouse,stp2_rat,rpc8_yeast	nuc,nuc,nuc,nuc
RRR[PL]RK	5	100	0	myod_caebr,myod_caeel,myod_drome,sum1_lytva,5e5_rat	nuc,nuc,nuc,nuc,nuc
[PL]RKRK[PL]	3	100	0	apte_drome,ski_human,cha4_yeast	nuc,nuc,nuc
R[RK]{3,}?[DE]K	12	100	0	atf5_human,roa2_human,usf1_human,usf2_human,zep2_human,usf1_mouse,usf2_mouse,usf1_rabit,usf2_rat,usf_strpu,usf1_xenbo,mat2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[PL]xxKR[IV]K[PL][DE]	5	100	0	myc_calja,myc_human,myc_hylla,myc_pantr,gcn5_yeast	nuc,nuc,nuc,nuc,nuc
#Transportin mediated pathways.
GGGxGGGxxSSS	6	100	0	croc_drome,br3b_human,egr1_human,twst_human,br3b_mouse,twst_mouse	nuc,nuc,nuc,nuc,nuc,nuc
SGxxG{3,}?xG{3,}?S	4	100	0	tp2b_chick,pur_human,rfx1_human,pur_mouse	nuc,nuc,nuc,nuc
[KR]G{2,}?xxG{3,}?[RK]	15	100	0	u2ag_drome,dnbi_hsv11,dnbi_hsv1k,fbrl_human,hme1_human,p72_human,u2ag_human,fbrl_leima,fbrl_mouse,nucl_mesau,fbrl_schpo,grp1_sinal,grp2_sinal,fbrl_xenla,nucl_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[DE][RK]{2,4}[GA]R[PL][GA]	2	100	0	rok_human,dbp2_schpo	nuc,nuc
[DE][RK]{3,}?x[KR]{2,}?[PL]	3	100	0	yema_drome,ru1a_human,tf3a_ranpi	nuc,nuc,nuc
KxxKxKxKxxxxxRKK	8	100	0	ran_brare,ran_chick,ran_human,ran_mouse,rant_mouse,spi1_schpo,gsp1_yeast,gsp2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KxKxKxxxxxRKK	11	100	0	ran_brare,ran_chick,atrx_human,ran_human,atrx_mouse,ran_mouse,rant_mouse,requ_mouse,spi1_schpo,gsp1_yeast,gsp2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[RK]x[RK]x[KR]x{4,6}RKK	16	100	0	ran_brare,ince_chick,ran_chick,atrx_human,dd16_human,ran_human,atrx_mouse,hx1a_maize,ran_mouse,rant_mouse,requ_mouse,prt2_scyca,spi1_schpo,apn1_yeast,gsp1_yeast,gsp2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[RK]{4,}?[QMNPL][RK]x{3,4}[RK]{2}	18	100	0	prt1_clupa,prt2_clupa,prt3_clupa,hsp1_droau,prt1_esolu,atrx_human,gcf_human,prt1_oncke,prt2_oncmy,prt3_oncmy,prt4_oncmy,prt5_oncmy,prt6_oncmy,prt9_oncmy,prta_oncmy,prtb_oncmy,prt1_salir,prt2_salir	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[MI]VWSRD[HEQ]RRK	8	100	0	sry_calja,sry_gorgo,sry_halgr,sry_horse,sry_human,sry_macfa,sry_melme,sry_pig	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[TS][RK]KK[VLI]R[PL]	4	100	0	hat4_arath,pu1_human,spib_human,pu1_mouse	nuc,nuc,nuc,nuc
N[QR]RQ[RK][EG]KR[IVLS]	26	100	0	hmp1_bovin,pou2_brare,oct1_chick,pdm1_drome,pdm2_drome,pdm2_drovi,hmp1_human,oc3a_human,oc3b_human,oct1_human,oct2_human,hmp1_melga,hmp1_mouse,oc11_mouse,oct1_mouse,oct2_mouse,oct3_mouse,hmp1_oncke,hmp1_oncmy,hmp1_pig,oct2_pig,hmp1_rat,sk1a_rat,sk1i_rat,hmp1_sheep,oct1_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
K[IVQM]RR[VI][STK]L	49	100	0	br11_brare,hmp1_bovin,pou1_brare,sgf3_bommo,zp12_brare,zp23_brare,zp47_brare,zp50_brare,brn3_chick,oct1_chick,un86_caeel,cf1a_drome,ipou_drome,pdm1_drome,pdm2_drome,pdm2_drovi,br3a_human,br3b_human,br3c_human,brn1_human,brn4_human,hmp1_human,oc3n_human,oct1_human,oct2_human,oct6_human,br3a_mouse,br3b_mouse,br3c_mouse,brn1_mouse,brn4_mouse,hmp1_mouse,oc11_mouse,oc3n_mouse,oct1_mouse,oct2_mouse,oct6_mouse,oct2_pig,hmp1_rat,oc3n_rat,oct6_rat,sk1a_rat,sk1i_rat,hmp1_sheep,oct1_xenla,po3a_xenla,po3b_xenla,pou1_xenla,pou2_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
WKQ[KR]RKF	18	100	0	tha_chick,thb_chick,tha1_human,tha2_human,thb1_human,tha1_mouse,tha2_mouse,thb1_mouse,thb2_mouse,tha2_rat,tha_ranca,thb1_rat,thb2_rat,thb_ranca,tha1_sheep,thb1_sheep,thaa_xenla,thab_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[LF][STK][VIQM][KR]R[QMVI][STK]L	52	100	0	br11_brare,hmp1_bovin,pou1_brare,sgf3_bommo,zp12_brare,zp23_brare,zp47_brare,zp50_brare,brn3_chick,oct1_chick,un86_caeel,cf1a_drome,ipou_drome,pdm1_drome,pdm2_drome,pdm2_drovi,br3a_human,br3b_human,br3c_human,brn1_human,brn4_human,hmp1_human,oc3a_human,oc3b_human,oc3n_human,oct1_human,oct2_human,oct6_human,br3a_mouse,br3b_mouse,br3c_mouse,brn1_mouse,brn4_mouse,hmp1_mouse,oc11_mouse,oc3n_mouse,oct1_mouse,oct2_mouse,oct3_mouse,oct6_mouse,oct2_pig,hmp1_rat,oc3n_rat,oct6_rat,sk1a_rat,sk1i_rat,hmp1_sheep,oct1_xenla,po3a_xenla,po3b_xenla,pou1_xenla,pou2_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
QNRRxKx[RK][RK][DQE]	110	100	0	hxa5_ambme,scr_apime,h114_brare,hox3_brafl,hx5l_brare,hxb4_brare,hxb5_brare,hxb6_brare,hxc5_brare,hxc6_brare,hxd4_brare,hxa2_chick,hxa4_chick,hxa7_cotja,hxb3_chick,hxb4_chick,hxb5_chick,hxb6_chick,hxd3_chick,hxd4_chick,hxd8_chick,vab7_caeel,hmdf_drome,hmev_drome,hmft_drohy,hmft_drome,hmpb_drome,hmux_drome,hmz1_drome,scr_drome,hxb4_fugru,evx1_human,evx2_human,hxa2_human,hxa3_human,hxa4_human,hxa5_human,hxa6_human,hxa7_human,hxb2_human,hxb3_human,hxb4_human,hxb5_human,hxb6_human,hxb7_human,hxb8_human,hxc4_human,hxc5_human,hxc6_human,hxc8_human,hxd3_human,hxd4_human,hxd8_human,ipf1_human,evx1_mouse,evx2_mouse,gsh2_mouse,gshi_mouse,hxa2_mouse,hxa3_mouse,hxa4_mouse,hxa5_mouse,hxa6_mouse,hxa7_mouse,hxb3_mouse,hxb4_mouse,hxb5_mouse,hxb6_mouse,hxb7_mouse,hxb8_mouse,hxc4_mouse,hxc5_mouse,hxc6_mouse,hxc8_mouse,hxd3_mouse,hxd4_mouse,hxd8_mouse,ipf1_mesau,ipf1_mouse,hxa2_notvi,hxc5_notvi,hxc6_notvi,hxa2_rat,hxa4_rat,hxa5_rat,hxa7_rat,hxb7_rat,hxb8_rat,hxc4_rat,hxc8_rat,hxd3_rat,ipf1_rat,hxa4_sheep,hxa5_salsa,hxa5_sheep,hxa7_sheep,hxb2_salsa,hxc6_sheep,hb7a_xenla,hb7b_xenla,hm8_xenla,hx3_xenla,hxa7_xenla,hxb3_xenla,hxb4_xenla,hxb5_xenla,hxb6_xenla,hxc5_xenla,hxc6_xenla,mix1_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[QMN]R[RK]xKx[RK][RK]	265	99.622641509434	0.377358490566038	hxa5_ambme,hxa9_ambme,hxad_ambme,hxb1_ambme,rt11_acaca,scr_apime,br11_brare,gsc_brare,h114_brare,hmma_brare,hmmb_brare,hmmc_brare,hmmd_brare,hmx1_bovin,hox3_brafl,hx5l_brare,hxa1_brare,hxad_brare,hxb4_brare,hxb5_brare,hxb6_brare,hxc5_brare,hxc6_brare,hxd4_brare,hxda_brare,hxdc_brare,hxdd_brare,pax6_brare,pou1_brare,pou2_brare,sgf3_bommo,zp12_brare,zp23_brare,zp47_brare,zp50_brare,gsc_chick,hm18_caeel,hmd1_chick,hmx1_chick,hmx2_chick,hmx2_cotja,hxa2_chick,hxa4_chick,hxa7_cotja,hxa9_cavpo,hxa9_chick,hxab_chick,hxb1_chick,hxb1_cypca,hxb3_chick,hxb4_chick,hxb5_chick,hxb6_chick,hxd3_chick,hxd4_chick,hxd8_chick,hxd9_chick,hxda_chick,hxdb_chick,hxdc_chick,hxdd_chick,li11_caeel,mec3_caebr,mec3_caeel,mec3_caevu,oct1_chick,pax6_chick,pax6_cotja,un30_caeel,vab7_caeel,cf1a_drome,gsc_drome,hmab_drome,hmdf_drome,hmdl_drome,hmes_drome,hmev_drome,hmft_drohy,hmft_drome,hmla_drome,hmpb_drome,hmsh_drome,hmux_drome,hmz1_drome,hmz2_drome,pdm1_drome,pdm2_drome,pdm2_drovi,scr_drome,hxa9_fugru,hxb4_fugru,hxc9_fugru,brn1_human,brn4_human,cdx1_human,cdx2_human,evx1_human,evx2_human,hb9_human,hmx1_human,hxa1_human,hxa2_human,hxa3_human,hxa4_human,hxa5_human,hxa6_human,hxa7_human,hxa9_human,hxaa_human,hxab_human,hxad_human,hxb1_human,hxb2_human,hxb3_human,hxb4_human,hxb5_human,hxb6_human,hxb7_human,hxb8_human,hxb9_human,hxbd_human,hxc4_human,hxc5_human,hxc6_human,hxc8_human,hxc9_human,hxcb_human,hxcc_human,hxcd_human,hxd3_human,hxd4_human,hxd8_human,hxd9_human,hxda_human,hxdb_human,hxdc_human,hxdd_human,ipf1_human,oc3a_human,oc3b_human,oc3n_human,oct1_human,oct2_human,oct6_human,pax6_human,pmx1_human,rms1_human,brn1_mouse,brn4_mouse,cdx1_mouse,cdx2_mesau,cdx2_mouse,cdx4_mouse,cx10_mouse,evx1_mouse,evx2_mouse,gsc_mouse,gsh2_mouse,gshi_mouse,hmx1_mouse,hmx2_mouse,hxa1_mouse,hxa2_mouse,hxa3_mouse,hxa4_mouse,hxa5_mouse,hxa6_mouse,hxa7_mouse,hxa9_mouse,hxaa_mouse,hxab_mouse,hxad_mouse,hxb1_mouse,hxb3_mouse,hxb4_mouse,hxb5_mouse,hxb6_mouse,hxb7_mouse,hxb8_mouse,hxb9_mouse,hxbd_mouse,hxc4_mouse,hxc5_mouse,hxc6_mouse,hxc8_mouse,hxc9_mouse,hxca_mouse,hxcb_mouse,hxcc_mouse,hxd1_mouse,hxd3_mouse,hxd4_mouse,hxd8_mouse,hxd9_mouse,hxda_mouse,hxdb_mouse,hxdc_mouse,hxdd_mouse,ipf1_mesau,ipf1_mouse,msx3_mouse,oc11_mouse,oc3n_mouse,oct1_mouse,oct2_mouse,oct3_mouse,oct6_mouse,pax6_mouse,pmx1_mouse,hxa2_notvi,hxc5_notvi,hxc6_notvi,hxdb_notvi,pax6_oryla,hxb8_pig,oct2_pig,cdx1_rat,hxa2_rat,hxa4_rat,hxa5_rat,hxa7_rat,hxb7_rat,hxb8_rat,hxc4_rat,hxc8_rat,hxd3_rat,ipf1_rat,msx2_rat,oc3n_rat,oct6_rat,pax6_rat,sk1a_rat,sk1i_rat,hxa4_sheep,hxa5_salsa,hxa5_sheep,hxa7_sheep,hxb2_salsa,hxc6_sheep,hxc9_sheep,rev_sivm1,gsca_xenla,gscb_xenla,hb7a_xenla,hb7b_xenla,hm8_xenla,hx3_xenla,hxa1_xenla,hxa7_xenla,hxb3_xenla,hxb4_xenla,hxb5_xenla,hxb6_xenla,hxb9_xenla,hxc5_xenla,hxc6_xenla,hxd1_xenla,mix1_xenla,oct1_xenla,pax6_xenla,po3a_xenla,po3b_xenla,pou1_xenla,pou2_xenla,pho2_yeast	nuc,nuc,nuc,nuc,mit,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
PQPKKKP	6	100	0	p53_bovin,p53_cerae,p53_human,p53_macfa,p53_macmu,p53_spebe	nuc,nuc,nuc,nuc,nuc,nuc
LKKIKQ	4	100	0	myb_bovin,myb_chick,myb_human,myb_mouse	nuc,nuc,nuc,nuc
KxKRQR	10	90	10	rel_avire,rel_chick,vab7_caeel,hmev_drome,evx1_human,evx2_human,evx1_mouse,evx2_mouse,rel_melga,hx3_xenla	cyt,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R[PL]xGx[KR][KR]xK	11	100	0	p53_brare,elg_drome,elk1_human,erf_human,etv2_human,sapa_human,sapb_human,elk1_mouse,erf_mouse,etv2_mouse,sapa_mouse	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KRKx{10,14}[KR]{3,}?x[KR]K	24	100	0	myf5_bovin,ppol_bovin,myf5_chick,myf6_chick,myog_chick,myog_cotja,ppol_chick,myf5_human,myf6_human,myog_human,ppol_human,sum1_lytva,myf5_mouse,myf6_mouse,myog_mouse,ppol_mouse,myf5_notvi,myog_pig,myf6_rat,myog_rat,ppol_rat,myf5_xenla,ppol_xenla,pr08_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RxRRx{4,6}RKK	14	100	0	p53_bovin,p53_cerae,p53_equas,p53_felca,p53_horse,p53_human,p53_macfa,p53_macmu,p53_mouse,p53_rabit,p53_rat,p53_sheep,prt2_scyca,mcm2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KR{3,}?[LVI]	21	100	0	hxad_ambme,hxad_brare,hxdd_chick,sdc3_caeel,atrx_human,hxad_human,hxcd_human,hxdd_human,ki67_human,ve2_hpv26,ve2_hpv58,ve2_hpv60,atrx_mouse,hxad_mouse,hxcd_mouse,hxdd_mouse,dpod_schpo,ra16_schpo,lama_xenla,rad5_yeast,rox3_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
K[PL]K{3,}?xKK	4	100	0	aant_hdvam,chd4_human,ell_human,t2d4_human	nuc,nuc,nuc,nuc
# motifs extracted from DNA_BIND regions
[RK]H[RK]xxx[RK]{2,4}xR	11	100	0	hsp2_horse,hsp3_horse,hap2_klula,hsp2_macmu,hsp2_macne,hsp2_mouse,hsp1_notty,hsp2_pig,hsp2_rat,php2_schpo,hap2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRxRxKxKQ	5	100	0	ath5_arath,ath6_arath,hat4_arath,hat5_arath,hat7_arath	nuc,nuc,nuc,nuc,nuc
KRx{1,3}Hx{3,5}R[LQ]RR	20	100	0	myc_astvu,myc_brare,myc1_cypca,myc2_cypca,myc_calja,myc_canfa,myc_carau,myc_chick,myc_felca,myc_human,myc_hylla,myc_marmo,myc_mouse,myc_oncmy,myc_pantr,myc_pig,myc_rat,myc_sheep,myc1_xenla,myc2_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
GR[RK]{2,4}xx[RK][QL]	3	100	0	prh_arath,hsp2_hylla,tat_hv1s3	nuc,nuc,nuc
RRKx{5,7}RRR	31	100	0	myf5_bovin,myod_brare,prt1_bufja,prt2_bufja,myf5_chick,myf6_chick,myod_caebr,myod_caeel,myod_chick,myod_cotja,myod_drome,hsp2_gorgo,hsp2_human,myf5_human,myf6_human,myod_human,myf5_mouse,myf6_mouse,myod_mouse,myf5_notvi,myo1_oncmy,myo2_oncmy,hsp2_panpa,hsp2_pantr,hsp2_ponpy,myod_pig,myf6_rat,myod_rat,myod_sheep,myf5_xenla,myod_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
PKRPx{5,8}Lx{2,4}RxKxK	4	100	0	ssrp_chick,ssrp_human,ssrp_mouse,ssrp_rat	nuc,nuc,nuc,nuc
KKPx{6,9}Kx{1,3}RK	14	100	0	h11_arath,h1_anapl,h101_chick,h103_chick,h110_chick,h11l_chick,h11r_chick,h1_chick,pop1_caeel,h1l_myttr,ku70_mouse,p53_mouse,h2am_rat,t2fa_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KKRKR[ST]	15	100	0	br3a_chick,brn3_chick,u2af_caebr,u2af_caeel,un86_caeel,br3a_human,br3b_human,h2b0_human,h2b_human,br3a_mouse,br3b_mouse,h2b1_mouse,h2b2_mouse,br3a_rat,h2b_saltr	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RK[RK][QML][RK]xR	18	100	0	ap1_chick,ap1_cotja,junb_cypca,jund_chick,ap1_drome,msl1_drome,ap1_human,junb_human,jund_human,ap1_mouse,junb_mouse,jund_mouse,ap1_pig,ap1_rat,junb_rat,jund_rat,ap1_serca,tfc5_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
K[RK]{2,}?[QL]x{3,8}R{3}	23	100	0	tha_chick,thb_chick,ato_drome,trsf_drome,nr54_human,tha1_human,tha2_human,thb1_human,thb2_human,tha1_mouse,tha2_mouse,thb1_mouse,thb2_mouse,tha2_rat,tha_ranca,thb1_rat,thb2_rat,prt1_scyca,tha1_sheep,thb1_sheep,thaa_xenla,thab_xenla,cha4_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[QL]K{2,4}x{8,12}[RK][QL][RK][QL]KR	9	100	0	brn3_chick,un86_caeel,ipou_drome,br3a_human,br3b_human,br3c_human,br3a_mouse,br3b_mouse,br3c_mouse	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
[RK]K{2,4}x[RK][QL][RK][PL]	5	100	0	rag1_chick,ez_drome,t2d1_drome,no56_human,rag1_oncmy	nuc,nuc,nuc,nuc,nuc
RRRK[STC]K      2       100     0       nira_emeni,nit4_neucr   nuc,nuc
Rx{2,3}Hx{3,5}RRRR	24	95.8333333333333	4.16666666666667	leu3_azovi,hsp2_bovin,hsp1_didma,arnt_human,gcf_human,hsp2_hylla,usf1_human,usf2_human,cbf1_klula,arnt_mouse,hsp2_macmu,hsp2_macne,usf1_mouse,usf2_mouse,hsp1_notty,hsp2_ponpy,prt_perfv,arnt_rabit,arnt_rat,usf1_rabit,usf2_rat,usf_strpu,usf1_xenbo,cbf1_yeast	cyt,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc	#false positive is bacterial protein.
RK]{2,4}[PL][RK]x{7,11}[RK][QL]KH	2	100	0	hmen_artsf,hmin_drome	nuc,nuc
RKRx{12,16}RRKK	12	100	0	creb_bovin,creb_chlvr,crem_canfa,chd3_human,crea_human,creb_human,creb_hydat,crea_mouse,creb_mouse,crem_mouse,creb_rat,crem_rat	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KR[GPL]R[GPL]R[GLP]RK	7	100	0	t2d1_drome,hmgc_human,hmgi_human,hmgy_human,hmgc_mouse,hmgy_mouse,prh_petcr	nuc,nuc,nuc,nuc,nuc,nuc,nuc
KR{2,4}x{3,6}[RK]{2,4}x{0,2}KR	2	100	0	t2d1_drome,prt2_scyca	nuc,nuc
KHLKGR	12	100	0	myb_bovin,myb_chick,myba_chick,mybb_chick,myb_human,myba_human,mybb_human,myb_mouse,myba_mouse,mybb_mouse,myb_xenla,myba_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRxRxRKQ	16	100	0	gbf1_arath,gbf2_arath,gbf3_arath,gsbd_drome,hmpr_drome,pax3_human,pax7_human,ocs1_maize,pax3_mouse,pax7_mouse,cpr1_petcr,cpr2_petcr,cpr3_petcr,taf1_tobac,emp1_wheat,hbpa_wheat	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KRxRxxRRLK      5       100     0       dbp_human,tef_human,dbp_mouse,dbp_rat,tef_rat   nuc,nuc,nuc,nuc,nuc
KKRKRT  8       100     0       br3a_chick,brn3_chick,un86_caeel,br3a_human,br3b_human,br3a_mouse,br3b_mouse,br3a_rat       nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
KRGRGRPRK       7       100     0       t2d1_drome,hmgc_human,hmgi_human,hmgy_human,hmgc_mouse,hmgy_mouse,prh_petcr nuc,nuc,nuc,nuc,nuc,nuc,nuc
RR[TS]x[QK][KR][KNS]	41	100	0	vdr_bovin,tha_chick,thb_chick,vdr_chick,vdr_cotja,dnl4_human,rrb2_human,rrg1_human,rrg2_human,tha1_human,tha2_human,thb1_human,thb2_human,vdr_human,hmgt_mouse,rra_mouse,rrb_mouse,rrg1_mouse,rrg2_mouse,tha1_mouse,tha2_mouse,thb1_mouse,thb2_mouse,vdr_mouse,rra_notvi,rrb_notvi,tha2_rat,tha_ranca,thb1_rat,thb2_rat,thb_ranca,vdr_rat,h1s_strpu,tha1_sheep,thb1_sheep,rra_xenla,rrg1_xenla,rrg2_xenla,thaa_xenla,thab_xenla,vdr_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RxR{2,}?[QL]x[ST]R	5	100	0	trsf_drome,gcf_human,rfx1_human,hsp1_tacac,prt1_thuth	nuc,nuc,nuc,nuc,nuc
[RK]{2,4}x{2,4}[QLM][RK]x{2,3}[RK]KR	5	100	0	ra14_canal,sdc3_caeel,spib_human,rag2_xenla,mcm3_yeast	nuc,nuc,nuc,nuc,nuc
[DE]KK[PL][GL]K[GL]	4	100	0	croc_drome,fre3_human,rbl2_human,fre3_mouse	nuc,nuc,nuc,nuc
[QL]xKRxKxKK	25	96	4	hme3_apime,hme6_apime,if2_aquae,hme1_brare,hme2_brare,hme3_brare,isl1_brare,isl2_brare,isl3_brare,hme1_chick,hme2_chick,isl1_chick,isl2_chick,hmen_drome,hmen_drovi,hmin_drome,hme1_human,hme2_human,isl1_human,hme1_mouse,hme2_mouse,is2a_oncts,is2b_oncts,isl3_oncts,isl2_rat	nuc,nuc,cyt,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
DK[QL]KK[QL]	5	100	0	dpoa_human,myba_human,dpoa_mouse,myba_mouse,dpoa_rat	nuc,nuc,nuc,nuc,nuc
KR[ST]RxxR{2,4}[QL]K	6	100	0	ces2_caeel,dbp_human,tef_human,dbp_mouse,dbp_rat,tef_rat	nuc,nuc,nuc,nuc,nuc,nuc
K[RK]{2,4}[ST]H	29	96.551724137931	3.44827586206897	myc_brare,myc1_cypca,myc2_cypca,myc_calja,myc_canfa,myc_carau,myc_chick,myc_felca,clk1_human,myc_human,myc_hylla,zep1_human,clk1_mouse,mcm3_mouse,myc_marmo,myc_mouse,zep1_mouse,myc_oncmy,p53_oryla,myc_pantr,myc_pig,myc_rat,myc_sheep,sye_theth,myc1_xenla,myc2_xenla,esp1_yeast,rpc2_yeast,snf6_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,cyt,nuc,nuc,nuc,nuc,nuc
RH[RK]Hx{2,4}[RK]{2,4}[PL]R	3	100	0	hap2_klula,php2_schpo,hap2_yeast	nuc,nuc,nuc
R[RK]{2,4}x{15,19}[RK]{2,4}[QLM]K       7       100     0       andr_human,hxcc_human,andr_mouse,dbx_mouse,andr_rabit,andr_rat,rme1_yeast        nuc,nuc,nuc,nuc,nuc,nuc,nuc
K{3,4}R{2,3}	15	100	0	h2b_chith,t2d1_drome,atrx_human,nnp1_human,sn22_human,ssrp_human,t2d1_human,tcf1_human,zfy_human,atrx_mouse,ssrp_mouse,tcf1_mouse,h2b_pladu,ssrp_rat,h2b_ureca	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
R{2,3}xK{2,3}R[ST]	12	100	0	oct1_chick,pdm1_drome,pdm2_drome,pdm2_drovi,oct1_human,oct2_human,oct1_mouse,oct2_mouse,oct2_pig,dpol_rcmvm,oct1_rat,oct1_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RKR{3,5}[ST]	4	100	0	mb11_copci,tat_sivmk,tat_sivml,yox1_yeast	nuc,nuc,nuc,nuc
Q[RK][HRK][RK]xRR	17	100	0	prtb_acigu,tra1_caebr,sus_drome,atrx_human,fre4_human,hsp2_hylla,atrx_mouse,hsp1_notty,hsp1_phaci,hsp1_plams,hsp1_sagim,rev_siva1,rev_sivag,rev_sivat,rev_sivs4,rev_sivsp,mcm2_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
RRR{3,5}T	5	100	0	prt1_bufja,prt2_bufja,hsp1_plain,prt_perfv,hsp1_sagim	nuc,nuc,nuc,nuc,nuc
DKx[QL][RK]KR	3	100	0	ftf1_drome,rag1_mouse,rpc8_yeast	nuc,nuc,nuc
D[KR]x{0,1}[QL][RK]{2,3}R	9	100	0	qin_avis3,ftf1_drome,mam_drome,ceba_human,cg2f_human,ceba_mouse,rag1_mouse,ceba_rat,rpc8_yeast	nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc,nuc
Px[PQLVMN][KR]{2,3}xKQ	7	100	0	myb_bovin,myb_chick,cbf_human,myb_human,myb_mouse,h1c1_xenla,myb_xenla	nuc,nuc,nuc,nuc,nuc,nuc,nuc