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Source: presto
Section: python
Priority: optional
Maintainer: Debian Python Modules Team <python-modules-team@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Build-Depends: debhelper (>= 11), dh-python,
python3-all, python3-setuptools
Standards-Version: 4.2.1
Homepage: https://presto.readthedocs.io
Vcs-Browser: https://salsa.debian.org/python-team/modules/presto
Vcs-Git: https://salsa.debian.org/python-team/modules/presto.git
Testsuite: autopkgtest-pkg-python
Package: python3-presto
Architecture: all
Depends: ${python3:Depends}, ${misc:Depends},
python3-numpy (>=1.8),
python3-scipy (>=0.14),
python3-pandas (>=0.15),
python3-biopython (>=1.65)
Description: toolkit for processing B and T cell sequences
pRESTO is a toolkit for processing raw reads from high-throughput
sequencing of B cell and T cell repertoires.
.
Dramatic improvements in high-throughput sequencing technologies now
enable large-scale characterization of lymphocyte repertoires, defined
as the collection of trans-membrane antigen-receptor proteins located on
the surface of B cells and T cells. The REpertoire Sequencing TOolkit
(pRESTO) is composed of a suite of utilities to handle all stages
of sequence processing prior to germline segment assignment. pRESTO
is designed to handle either single reads or paired-end reads. It
includes features for quality control, primer masking, annotation of
reads with sequence embedded barcodes, generation of unique molecular
identifier (UMI) consensus sequences, assembly of paired-end reads and
identification of duplicate sequences. Numerous options for sequence
sorting, sampling and conversion operations are also included.
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