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Source: presto
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Section: python
Testsuite: autopkgtest-pkg-pybuild
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
python3-all,
python3-setuptools,
python3-biopython <!nocheck>,
python3-pandas <!nocheck>,
python3-scipy <!nocheck>,
python3-packaging <!nocheck>,
vsearch [amd64 arm64 kfreebsd-amd64 ppc64el] <!nocheck>,
cd-hit <!nocheck>,
Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/presto
Vcs-Git: https://salsa.debian.org/med-team/presto.git
Homepage: https://presto.readthedocs.io
Package: python3-presto
Architecture: any
Depends: ${python3:Depends},
${misc:Depends},
python3-numpy,
python3-scipy,
python3-pandas,
python3-biopython,
python3-packaging,
vsearch [amd64 arm64 kfreebsd-amd64 ppc64el],
cd-hit,
ncbi-blast+,
Description: toolkit for processing B and T cell sequences (Python3 module)
pRESTO is a toolkit for processing raw reads from high-throughput
sequencing of B cell and T cell repertoires.
.
Dramatic improvements in high-throughput sequencing technologies now
enable large-scale characterization of lymphocyte repertoires, defined
as the collection of trans-membrane antigen-receptor proteins located on
the surface of B cells and T cells. The REpertoire Sequencing TOolkit
(pRESTO) is composed of a suite of utilities to handle all stages
of sequence processing prior to germline segment assignment. pRESTO
is designed to handle either single reads or paired-end reads. It
includes features for quality control, primer masking, annotation of
reads with sequence embedded barcodes, generation of unique molecular
identifier (UMI) consensus sequences, assembly of paired-end reads and
identification of duplicate sequences. Numerous options for sequence
sorting, sampling and conversion operations are also included.
.
This package provides the presto Python3 module.
Package: presto
Architecture: all
Depends: ${python3:Depends},
${misc:Depends},
python3-presto
Description: toolkit for processing B and T cell sequences
pRESTO is a toolkit for processing raw reads from high-throughput
sequencing of B cell and T cell repertoires.
.
Dramatic improvements in high-throughput sequencing technologies now
enable large-scale characterization of lymphocyte repertoires, defined
as the collection of trans-membrane antigen-receptor proteins located on
the surface of B cells and T cells. The REpertoire Sequencing TOolkit
(pRESTO) is composed of a suite of utilities to handle all stages
of sequence processing prior to germline segment assignment. pRESTO
is designed to handle either single reads or paired-end reads. It
includes features for quality control, primer masking, annotation of
reads with sequence embedded barcodes, generation of unique molecular
identifier (UMI) consensus sequences, assembly of paired-end reads and
identification of duplicate sequences. Numerous options for sequence
sorting, sampling and conversion operations are also included.
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