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"""
Unit tests for Annotation module
"""
# Info
__author__ = 'Jason Anthony Vander Heiden'
# Imports
import os
import sys
import time
import unittest
from collections import OrderedDict
# Presto imports
from presto.IO import getFileType, readSeqFile
# Paths
test_path = os.path.dirname(os.path.realpath(__file__))
data_path = os.path.join(test_path, 'data')
class TestIO(unittest.TestCase):
def setUp(self):
print('-> %s()' % self._testMethodName)
# Annotation dictionaries
self.germ_file = os.path.join(data_path, 'human_igv_trv.fasta')
self.missing_file = os.path.join(data_path, 'human_igv_trv.bob')
# Start clock
self.start = time.time()
def tearDown(self):
# End clock
t = time.time() - self.start
print('<- %s() %.3f' % (self._testMethodName, t))
#@unittest.skip('-> getFileType() skipped\n')
def test_getFileType(self):
result = getFileType(self.germ_file)
print(result)
self.assertEqual('fasta', result)
result = getFileType(self.missing_file)
print(result)
self.assertEqual('fasta', result)
#@unittest.skip('-> readSeqFile() skipped\n')
def test_getFileType(self):
pass
#result = readSeqFile(self.germ_file)
#self.assertRaises(SystemExit, readSeqFile(self.missing_file))
if __name__ == '__main__':
unittest.main()
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