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prime-phylo has become a big software project. In order to keep order of things, we need to follow some development practices:
* If you incorporate source code into the prime-phylo software project from some other open source software project, you need to verify that that software license is compatible with the prime-phylo software license. You also need to edit the file:
https://svn.sbc.su.se/repos/PrIME/trunk/COPYING
to document the added source code (license and copyright)
* The directory
https://svn.sbc.su.se/repos/PrIME/trunk/src/cxx/libraries/prime
has become quite big. Only check in new files here that are actually in use.
* About keeping the release source tarball in good shape:
If you spot files that are outdated and not used anymore please move them to
https://svn.sbc.su.se/repos/PrIME/trunk/src/cxx/libraries/prime/deprecated_files/manually_picked/
If you spot files that are of little use for an end user of prime-phylo, and hence should not be included in the released source tarball (tar.gz), you could could move the files here:
https://svn.sbc.su.se/repos/PrIME/trunk/excluded_from_release
Alternatively could also create a new directory for your files that should not be included in the released source tarball. After that you need to edit
https://svn.sbc.su.se/repos/PrIME/trunk/CMakeLists.txt
and adjust the line:
set(CPACK_SOURCE_IGNORE_FILES "\\\\.svn/" "/deprecated_files/" "/docbook/" "/Scripts/" "/primeOrthology/" "/.cdtproject" "/excluded_from_release/" "/.cproject" "/.project")
You could use the same technique if you want a directory where to put some experimental code. You could then add something like this
into CMakeLists.txt:
if(esjolund_experimental_code)
add_subdirectory(experimental_code)
endif()
To actually build the experimental code you need pass a variable to cmake:
cmake -Desjolund_experimental_code=on ...
* The steps involved in making a new release:
edit prime-trunk/excluded_from_release/debian/changelog
edit prime-trunk/ChangeLog
edit prime-trunk/CMakeLists and adjust the version numbering
set(CPACK_PACKAGE_VERSION_MAJOR "1")
set(CPACK_PACKAGE_VERSION_MINOR "0")
set(CPACK_PACKAGE_VERSION_PATCH "7")
create a source package with:
dir=`mktemp -d`
cd $dir
cmake /path/to/prime-trunk && make package_source
create a DEB package on a computer with VirtualBox and Vagrant installed:
nr_of_cores=5
dir=`mktemp -d`
cd $dir
python /path/to/prime-trunk/excluded_from_release/packaging/debian/build_all_ubuntu_and_debian_packages.py /path/to/prime-trunk $nr_of_cores
(You might want to adjust build_all_ubuntu_and_debian_packages.py to build for a specific Debian or Ubuntu version)
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