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Source: prime-phylo
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Erik Sjolund <erik.sjolund@gmail.com>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 11~),
gengetopt,
cmake,
libblas-dev,
liblapack-dev,
gfortran,
bison,
flex,
libopenmpi-dev,
libxml2-dev,
libboost-dev,
libboost-mpi-dev,
libboost-serialization-dev,
zlib1g-dev
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/prime-phylo
Vcs-Git: https://salsa.debian.org/med-team/prime-phylo.git
Homepage: http://prime.sbc.su.se
Package: prime-phylo
Architecture: any
Depends: ${perl:Depends},
${shlibs:Depends},
${misc:Depends}
Suggests: njplot,
treeviewx,
muscle,
probalign,
mafft,
python-biopython,
mrbayes,
phyml,
raxml
Description: bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package
supporting inference of evolutionary parameters in a Bayesian framework
using Markov chain Monte Carlo simulation. A distinguishing feature of
PrIME is that the species tree is taken into account when analyzing gene
trees.
.
The input data to PrIME is a multiple sequence alignment in FASTA format
and the output data contains trees in Newick format.
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