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prime-phylo 1.0.11-9
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PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using MCMC. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The software is written in C++ and is licensed under the GPL version 3. For details about licensing see the file COPYING.