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#!/usr/bin/make -f
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
include /usr/share/dpkg/default.mk
sampledir:=$(CURDIR)/debian/$(DEB_SOURCE)-examples/usr/share/doc/$(DEB_SOURCE)/examples
BUILDARCH:=$(shell dpkg-architecture -q DEB_BUILD_ARCH_ENDIAN)
P3CORE_FAILED_TESTS:='primer_masker' \
'primer_masker_formatted'
FAILED_TESTS:=testmasker
%:
dh $@ --sourcedirectory=src
override_dh_auto_build:
dh_auto_build -- 'CPP=$$(CXX)'
override_dh_auto_install:
dh_auto_install -- PREFIX=debian/$(DEB_SOURCE)/usr
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
ifneq ($(BUILDARCH),little)
cp -a test/p3test.pl test/p3test.pl~
cp -a test/Makefile test/Makefile~
# exclude tests known to fail on big endian
# See README.source for further explanation.
for tst in $(P3CORE_FAILED_TESTS) ; do sed -i "/$${tst}.,/d" test/p3test.pl ; done
for tst in $(FAILED_TESTS); do sed -i "/^test:/s/$$tst//" test/Makefile; done
endif
dh_auto_test --no-parallel --sourcedirectory=test
ifneq ($(BUILDARCH),little)
# restore original test file
mv test/p3test.pl~ test/p3test.pl
mv test/Makefile~ test/Makefile
endif
dh clean --sourcedirectory=test
endif
execute_after_dh_installexamples:
mkdir -p $(sampledir)/test;
mkdir -p $(sampledir)/src;
mkdir -p $(sampledir)/settings_files;
mkdir -p $(sampledir)/kmer_lists;
cp -aR ./test/* $(sampledir)/test;
cp -aR ./src/humrep_and_simple.txt $(sampledir)/src;
cp -a settings_files/primer*.txt $(sampledir)/settings_files;
cp -aR ./kmer_lists/*.list $(sampledir)/kmer_lists;
chmod -x $(sampledir)/test/thal*
chmod -x $(sampledir)/test/amplicon3/amplicons.csv
chmod -x $(sampledir)/test/primer_windows_newlines_input
sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(sampledir)/test/long_seq_tm_test.pl ;
sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(sampledir)/test/vgrep.pl ;
execute_after_dh_auto_clean:
rm -rf ${CURDIR}/src/debian
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