1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
|
/**
* Title: ProAlign<p>
* Description: <p>
* Copyright: Copyright (c) Ari Loytynoja<p>
* License: GNU GENERAL PUBLIC LICENSE<p>
* @see http://www.gnu.org/copyleft/gpl.html
* Company: ULB<p>
* @author Ari Loytynoja
* @version 1.0
*/
package proalign;
import javax.swing.JFrame;
import javax.swing.JPanel;
import javax.swing.JViewport;
import javax.swing.JScrollPane;
import javax.swing.JScrollBar;
import javax.swing.BorderFactory;
import java.awt.Color;
import java.awt.Dimension;
import java.awt.Font;
import java.awt.Container;
import java.awt.Point;
import java.awt.event.WindowEvent;
import java.awt.event.WindowAdapter;
public class QualityWindow extends JFrame {
JScrollPane sPane;
int height;
double[] postProb;
PixelRule pixRule;
PrintCurve curve;
ResultWindow rw;
String name;
QualityWindow(AlignmentNode root, String name, ResultWindow rw) {
this.rw = rw;
this.name = name;
postProb = new double[root.cellPath.length];
for(int i=0; i<root.cellPath.length; i++) {
postProb[i] = root.getOnePostProbAt(i, name);
}
height = this.getHeight();
curve = new PrintCurve(QualityWindow.this, postProb);
// pixelruler.
pixRule = new PixelRule();
pixRule.setPreferredWidth((int) curve.getPreferredSize().getWidth());
pixRule.setIncrement(curve.xScale);
pixRule.setBackground(Color.white);
sPane = new JScrollPane(curve,
JScrollPane.VERTICAL_SCROLLBAR_NEVER,
JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
sPane.setViewportBorder(BorderFactory.createLineBorder(Color.black));
sPane.setColumnHeaderView(pixRule);
sPane.setBackground(Color.white);
Container cp = getContentPane();
cp.add(sPane);
addWindowListener(new WindowAdapter() {
public void windowClosing(WindowEvent e){
PrintTree.numOpenWindows--;
dispose();
}
});
}
int getVisibleHeight() {
return sPane.getViewport().getHeight();
}
void upDateData(AlignmentNode root, String name){
postProb = new double[root.cellPath.length];
for(int i=0; i<root.cellPath.length; i++) {
postProb[i] = root.getOnePostProbAt(i, name);
}
curve.upDateData(postProb);
}
}
|
