File: run-unit-test

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proalign 0.603-6
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#!/bin/bash

echo "TODO: find sample data prim.fas and prim.tre"
echo "see http://ueg.ulb.ac.be/ProAlign/main.html#command"
exit 1

set -e

pkg=proalign

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP

cd $AUTOPKGTEST_TMP

proalign -nogui -seqfile=prim.fas -treefile=prim.tre -outfile=prim.pir -outformat=pir