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## Process this file with automake to produce Makefile.in
AUTOMAKE_OPTIONS = foreign
phenofiles = height.txt \
logist_data.txt \
mmscore_pheno.PHE \
coxph_data.txt
gtdatadir = gtdata
genofiles = $(gtdatadir)/test.mldose \
$(gtdatadir)/test.mlprob \
$(gtdatadir)/test.mlinfo \
$(gtdatadir)/test.map \
$(gtdatadir)/test.dose.fvi \
$(gtdatadir)/test.dose.fvd \
$(gtdatadir)/test.prob.fvi \
$(gtdatadir)/test.prob.fvd \
$(gtdatadir)/mmscore_gen.mlinfo \
$(gtdatadir)/mmscore_gen.mldose \
$(gtdatadir)/mmscore_gen.mlprob \
$(gtdatadir)/mmscore_gen.dose.fvi \
$(gtdatadir)/mmscore_gen.dose.fvd \
$(gtdatadir)/mmscore_gen.prob.fvi \
$(gtdatadir)/mmscore_gen.prob.fvd
additional_files = mmscore.R \
mmscore_InvSigma_aj.sex.age.dat \
README
example_scripts = example_qt.sh \
example_bt.sh \
example_cox.sh \
example_mmscore.sh
exampledir = $(pkgdatadir)/examples
dist_example_DATA = $(phenofiles) $(additional_files)
dist_example_SCRIPTS = $(example_scripts)
gdatadir = $(pkgdatadir)/examples/gtdata
dist_gdata_DATA = $(genofiles)
cleanfiles_example_qt = height_allcov_fv_add.out.txt \
height_base_add.out.txt \
height_base_fv_add.out.txt \
height_int1_fv_add.out.txt \
height_ngp2_2df.out.txt \
height_ngp2_add.out.txt \
height_ngp2_allcov_fv_2df.out.txt \
height_ngp2_allcov_fv_add.out.txt \
height_ngp2_allcov_fv_domin.out.txt \
height_ngp2_allcov_fv_over_domin.out.txt \
height_ngp2_allcov_fv_recess.out.txt \
height_ngp2_domin.out.txt \
height_ngp2_fv_2df.out.txt \
height_ngp2_fv_add.out.txt \
height_ngp2_fv_domin.out.txt \
height_ngp2_fv_over_domin.out.txt \
height_ngp2_fv_recess.out.txt \
height_ngp2_int1_fv_2df.out.txt \
height_ngp2_int1_fv_add.out.txt \
height_ngp2_int1_fv_domin.out.txt \
height_ngp2_int1_fv_over_domin.out.txt \
height_ngp2_int1_fv_recess.out.txt \
height_ngp2_over_domin.out.txt \
height_ngp2_recess.out.txt \
height_ngp2_robust_fv_2df.out.txt \
height_ngp2_robust_fv_add.out.txt \
height_ngp2_robust_fv_domin.out.txt \
height_ngp2_robust_fv_over_domin.out.txt \
height_ngp2_robust_fv_recess.out.txt \
height_ngp2_robust_int1_fv_2df.out.txt \
height_ngp2_robust_int1_fv_add.out.txt \
height_ngp2_robust_int1_fv_domin.out.txt \
height_ngp2_robust_int1_fv_over_domin.out.txt \
height_ngp2_robust_int1_fv_recess.out.txt \
height_robust_fv_add.out.txt \
height_robust_int1_fv_add.out.txt
cleanfiles_example_bt = logist_add.out.txt \
logist_fv_add.out.txt \
logist_prob_2df.out.txt \
logist_prob_add.out.txt \
logist_prob_domin.out.txt \
logist_prob_fv_2df.out.txt \
logist_prob_fv_add.out.txt \
logist_prob_fv_domin.out.txt \
logist_prob_fv_over_domin.out.txt \
logist_prob_fv_recess.out.txt \
logist_prob_over_domin.out.txt \
logist_prob_recess.out.txt
cleanfiles_example_cox = coxph_dose_add.out.txt \
coxph_dose_fv_add.out.txt \
coxph_prob_2df.out.txt \
coxph_prob_add.out.txt \
coxph_prob_domin.out.txt \
coxph_prob_fv_2df.out.txt \
coxph_prob_fv_add.out.txt \
coxph_prob_fv_domin.out.txt \
coxph_prob_fv_over_domin.out.txt \
coxph_prob_fv_recess.out.txt \
coxph_prob_over_domin.out.txt \
coxph_prob_recess.out.txt
cleanfiles_example_mmscore = mmscore_dose_add.out.txt \
mmscore_dose_fv_add.out.txt \
mmscore_prob_2df.out.txt \
mmscore_prob_add.out.txt \
mmscore_prob_domin.out.txt \
mmscore_prob_fv_2df.out.txt \
mmscore_prob_fv_add.out.txt \
mmscore_prob_fv_domin.out.txt \
mmscore_prob_fv_over_domin.out.txt \
mmscore_prob_fv_recess.out.txt \
mmscore_prob_over_domin.out.txt \
mmscore_prob_recess.out.txt
CLEANFILES = $(cleanfiles_example_qt) $(cleanfiles_example_bt) \
$(cleanfiles_example_cox) $(cleanfiles_example_mmscore)
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