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/**
* \file invsigma.h
* \author mkooyman
*
* \brief Contains the definition of the InvSigma class.
*/
/*
* Copyright (C) 2009--2016 Various members of the GenABEL team. See
* the SVN commit logs for more details.
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
* MA 02110-1301, USA.
*
*/
#ifndef DATA_H_
#define DATA_H_
#include <string>
extern bool is_interaction_excluded;
//TODO(unknown) This function is not used. Remove in near future
//unsigned int Nmeasured(char * fname, int nphenocols, int npeople);
#include "phedata.h"
#include "gendata.h"
class InvSigma {
private:
static const unsigned MAXIMUM_PEOPLE_AMOUNT = 1000000;
unsigned int npeople; /* number of people */
std::string filename;
mematrix<double> matrix; /* file is stored here */
public:
InvSigma(const char * filename_, const phedata& phe);
mematrix<double> & get_matrix();
~InvSigma();
};
#endif // DATA_H_
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