1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
|
The purpose of this patch is to rename programs with a too generic name, to avoid
conflicts on file names.
--- probcons.orig/Makefile
+++ probcons/Makefile
@@ -35,7 +35,7 @@
# 3) Dependencies
################################################################################
-TARGETS = probcons probcons-RNA compare project makegnuplot
+TARGETS = probcons probcons-RNA pc-compare pc-project pc-makegnuplot
.PHONY : all
all : $(TARGETS)
@@ -43,8 +43,8 @@
probcons : MultiSequence.h ProbabilisticModel.h ScoreType.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h Defaults.h SafeVector.h Main.cc
$(CXX) $(CXXFLAGS) -lm -o probcons Main.cc
-compare : MultiSequence.h Sequence.h FileBuffer.h SafeVector.h CompareToRef.cc
- $(CXX) $(CXXFLAGS) -o compare CompareToRef.cc
+pc-compare : MultiSequence.h Sequence.h FileBuffer.h SafeVector.h CompareToRef.cc
+ $(CXX) $(CXXFLAGS) -o pc-compare CompareToRef.cc
probcons-RNA : MultiSequence.h ProbabilisticModel.h ScoreType.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h Defaults-RNA.h SafeVector.h Main-RNA.cc
$(CXX) $(CXXFLAGS-RNA) -lm -o probcons-RNA Main-RNA.cc
@@ -52,11 +52,11 @@
fixref : MultiSequence.h ProbabilisticModel.h ScoreType.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h Defaults.h SafeVector.h FixRef.cc
$(CXX) $(CXXFLAGS) -o fixref FixRef.cc
-project : MultiSequence.h Sequence.h SafeVector.h ProjectPairwise.cc
- $(CXX) $(CXXFLAGS) -o project ProjectPairwise.cc
+pc-project : MultiSequence.h Sequence.h SafeVector.h ProjectPairwise.cc
+ $(CXX) $(CXXFLAGS) -o pc-project ProjectPairwise.cc
-makegnuplot : MakeGnuPlot.cc
- $(CXX) $(CXXFLAGS) -o makegnuplot MakeGnuPlot.cc
+pc-makegnuplot : MakeGnuPlot.cc
+ $(CXX) $(CXXFLAGS) -o pc-makegnuplot MakeGnuPlot.cc
.PHONY : clean
clean:
|
