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// LinkTable.h: interface for the LinkTable class.
//
//////////////////////////////////////////////////////////////////////
#if !defined(AFX_LINKTABLE_H__DE420983_21EB_4E38_A778_6F31F2460741__INCLUDED_)
#define AFX_LINKTABLE_H__DE420983_21EB_4E38_A778_6F31F2460741__INCLUDED_
#if _MSC_VER > 1000
#pragma once
#endif // _MSC_VER > 1000
#include "Link.h"
#include <vector>
class MultiSequence;
class AlignedFragment;
class Block;
typedef std::vector<AlignedFragment> AVECT;
class LinkTable
{
public:
void PrintPlain(FILE *file,int m);
void Print(FILE *file, int m);
Block * OneBlock();
int ExtendLeft(int& orgPos, int orgLen);
void Print(FILE *file);
int Entry(int sid, int off);
LinkTable(MultiSequence *seqs, AVECT& fragments);
Link **entries;
int *seqBound;
int seqNum;
int entNum;
LinkTable();
LinkTable(int num, int cap);
virtual ~LinkTable();
};
#endif // !defined(AFX_LINKTABLE_H__DE420983_21EB_4E38_A778_6F31F2460741__INCLUDED_)
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