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profbval 1.0.22-6
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Source: profbval
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Laszlo Kajan <lkajan@rostlab.org>,
           Christof Angermüller <angermue@in.tum.de>,
           Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 11~),
               perl
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/profbval
Vcs-Git: https://salsa.debian.org/med-team/profbval.git
Homepage: https://www.rostlab.org/owiki/index.php/PROFbval

Package: profbval
Architecture: all
Depends: ${perl:Depends},
         ${misc:Depends},
         profnet-bval
Recommends: blast2,
            librg-utils-perl,
            profphd
Suggests: pp-popularity-contest
Description: predictor of flexible/rigid protein residues from sequence
 PROFbval can be useful for both protein structure and 
 function predictions. For instance, a biologist can locate potentially 
 antigenic determinants by identifying the most flexible residues on the 
 protein surface. Additionally, a crystallographer can locate residues that 
 potentially have high experimental B-values. 
 .
 PROFbval takes the following input, further described on profbval(1):
  * a protein sequence in a FASTA file
  * secondary structure and solvent accessibility prediction by prof(1)
  * an HSSP file
 .
 Background: the mobility of a given residue on the protein surface is related
 to its functional role.
 Therefore, identification of extremely rigid or flexible 
 residues on the protein surface is helpful for identifying functionally 
 important residues in proteins. A common measure of atom mobility in proteins 
 is B-value data from x-ray crystallography structures. PROFbval is the first
 tool to predict normalized backbone B-values from amino-acid sequence.