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#!/bin/sh
# autopkgtest check: build and run example from man page
# Author: Tatiana Malygina <merlettaia@gmail.com>
set -e
pkg=profisis
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cd $AUTOPKGTEST_TMP
cp -a /usr/share/doc/${pkg}/examples/* .
find . -type f -name "*.gz" -exec gunzip \{\} \;
for lnk in `find . -type l -name "*.gz"` ; do
ln -s `basename $(readlink $lnk) .gz` `echo $lnk | sed 's/\.gz$//'`
rm $lnk
done
profisis --fastafile 3A1P_A.fasta --hsspfile 3A1P_A.hssp --rdbproffile 3A1P_A.rdbProf --outfile 3A1P_A-result.profisis
[ -z $(cmp -s 3A1P_A-result.profisis 3A1P_A.profisis) ]
echo "profisis runs as expected"
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