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diff -ruN -x '.*.swp' -x 'profnet*' -x .svn src/Makefile isis_dir/Makefile
--- src/Makefile 2010-02-10 17:55:33.923514458 +0100
+++ isis_dir/Makefile 2010-02-26 11:22:10.199787414 +0100
@@ -1,9 +1,9 @@
#=====================================================================
F77 = gfortran
-BIN = profnet_prof
+BIN = profnet_isis
#=====================================================================
ARCH = LINUX
-FFLAGS := -O3 -fbounds-check -Wuninitialized
+FFLAGS := -O3 -Wuninitialized
FFLAGS := $(FFLAGS) -Wall -Wno-unused
#=====================================================================
NN_OBJS := prof.f lib-prof.f lib-sys-$(ARCH).f
diff -ruN -x '.*.swp' -x 'profnet*' -x .svn src/profPar.f isis_dir/profPar.f
--- src/profPar.f 2010-02-23 10:17:25.315661972 +0100
+++ isis_dir/profPar.f 2010-02-26 11:20:32.863648133 +0100
@@ -32,19 +32,23 @@
C lkajan: what it needs.
C lkajan: The below numbers are the values used by prof as in
C lkajan: prof{sec,acc}:
+C PARAMETER (NUMIN_MAX= 270)
PARAMETER (NUMIN_MAX= 800)
C lkajan: The below number of 10000 is suitable for a method that
C lkajan: presents a sample for each amino acids of a protein because
C lkajan: we do not encounter a protein longer than 10000AA very often.
- PARAMETER (NUMSAM_MAX= 10000)
+ PARAMETER (NUMSAM_MAX= 422700)
+C PARAMETER (NUMHID_MAX= 50)
PARAMETER (NUMHID_MAX= 100)
PARAMETER (NUMOUT_MAX= 10)
+C PARAMETER (NUMFILES_MAX= 336)
PARAMETER (NUMFILES_MAX= 2)
- PARAMETER (STPSWPMAX_MAX= 5)
+ PARAMETER (STPSWPMAX_MAX= 200)
C lkajan: STPMAX_MAX somehow controls the number of input vectors that can
C lkajan: be evaluated in one go. There is a simple integer array that gets
C lkajan: allocated to STPMAX_MAX size.
- PARAMETER (STPMAX_MAX= 5)
+C PARAMETER (STPMAX_MAX= 99999999)
+ PARAMETER (STPMAX_MAX= 1000000)
PARAMETER (NUMARG_MAX= 500)
C G M T
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