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diff -ruN -x '.*.swp' -x 'profnet*' -x .svn src/Makefile snapfun_dir/Makefile
--- src/Makefile 2010-02-10 17:55:33.923514458 +0100
+++ snapfun_dir/Makefile 2010-02-23 10:38:31.391656287 +0100
@@ -1,6 +1,6 @@
#=====================================================================
F77 = gfortran
-BIN = profnet_prof
+BIN = profnet_snapfun
#=====================================================================
ARCH = LINUX
FFLAGS := $(FFLAGS) -O2 -Wuninitialized
diff -ruN -x '.*.swp' -x 'profnet*' -x .svn src/Makefile.orig snapfun_dir/Makefile.orig
--- src/Makefile.orig 1970-01-01 01:00:00.000000000 +0100
+++ snapfun_dir/Makefile.orig 2010-02-23 10:38:31.395653152 +0100
@@ -0,0 +1,29 @@
+#=====================================================================
+F77 = gfortran
+BIN = profnet_prof
+#=====================================================================
+ARCH = LINUX
+FFLAGS := -O3 -fbounds-check -Wuninitialized
+FFLAGS := $(FFLAGS) -Wall -Wno-unused
+#=====================================================================
+all: $(BIN)
+
+#=====================================================================
+# Make Neural Network
+#=====================================================================
+
+NN_OBJS=prof.f lib-prof.f lib-sys-$(ARCH).f
+
+$(BIN): $(NN_OBJS)
+ @echo --- making $(BIN)
+ $(F77) -o $@ $(FFLAGS) $(NN_OBJS)
+
+clean:
+ rm -f *.o $(BIN)
+
+install:
+ mkdir -p $(DESTDIR)$(prefix)/bin && \
+ cp $(BIN) $(DESTDIR)$(prefix)/bin/
+
+.PHONY: all clean install
+
diff -ruN -x '.*.swp' -x 'profnet*' -x .svn src/profPar.f snapfun_dir/profPar.f
--- src/profPar.f 2010-02-23 10:17:25.315661972 +0100
+++ snapfun_dir/profPar.f 2010-02-23 10:38:31.399648899 +0100
@@ -32,20 +32,20 @@
C lkajan: what it needs.
C lkajan: The below numbers are the values used by prof as in
C lkajan: prof{sec,acc}:
- PARAMETER (NUMIN_MAX= 800)
+ PARAMETER (NUMIN_MAX= 900)
C lkajan: The below number of 10000 is suitable for a method that
C lkajan: presents a sample for each amino acids of a protein because
C lkajan: we do not encounter a protein longer than 10000AA very often.
- PARAMETER (NUMSAM_MAX= 10000)
- PARAMETER (NUMHID_MAX= 100)
- PARAMETER (NUMOUT_MAX= 10)
- PARAMETER (NUMFILES_MAX= 2)
- PARAMETER (STPSWPMAX_MAX= 5)
+ PARAMETER (NUMSAM_MAX= 100000)
+ PARAMETER (NUMHID_MAX= 50)
+ PARAMETER (NUMOUT_MAX= 2)
+ PARAMETER (NUMFILES_MAX= 336)
+ PARAMETER (STPSWPMAX_MAX= 400)
C lkajan: STPMAX_MAX somehow controls the number of input vectors that can
C lkajan: be evaluated in one go. There is a simple integer array that gets
C lkajan: allocated to STPMAX_MAX size.
- PARAMETER (STPMAX_MAX= 5)
- PARAMETER (NUMARG_MAX= 500)
+ PARAMETER (STPMAX_MAX= 100000)
+ PARAMETER (NUMARG_MAX= 400)
C G M T
*---- ------------------------------------------------- *
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