1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
|
diff -ruN -x '.*.swp' -x 'profnet*' -x .svn src/Makefile con_dir/Makefile
--- src/Makefile 2010-02-10 17:55:33.923514458 +0100
+++ con_dir/Makefile 2010-02-23 10:48:22.263658539 +0100
@@ -1,6 +1,6 @@
#=====================================================================
F77 = gfortran
-BIN = profnet_prof
+BIN = profnet_con
#=====================================================================
ARCH = LINUX
FFLAGS := -O3 -fbounds-check -Wuninitialized
diff -ruN -x '.*.swp' -x 'profnet*' -x .svn src/profPar.f con_dir/profPar.f
--- src/profPar.f 2010-02-23 10:17:25.315661972 +0100
+++ con_dir/profPar.f 2010-02-23 10:47:35.907691244 +0100
@@ -32,19 +32,20 @@
C lkajan: what it needs.
C lkajan: The below numbers are the values used by prof as in
C lkajan: prof{sec,acc}:
- PARAMETER (NUMIN_MAX= 800)
+ PARAMETER (NUMIN_MAX= 767)
C lkajan: The below number of 10000 is suitable for a method that
C lkajan: presents a sample for each amino acids of a protein because
C lkajan: we do not encounter a protein longer than 10000AA very often.
- PARAMETER (NUMSAM_MAX= 10000)
+ PARAMETER (NUMSAM_MAX= 310000)
PARAMETER (NUMHID_MAX= 100)
PARAMETER (NUMOUT_MAX= 10)
- PARAMETER (NUMFILES_MAX= 2)
- PARAMETER (STPSWPMAX_MAX= 5)
+ PARAMETER (NUMFILES_MAX= 336)
+ PARAMETER (STPSWPMAX_MAX= 200)
C lkajan: STPMAX_MAX somehow controls the number of input vectors that can
C lkajan: be evaluated in one go. There is a simple integer array that gets
C lkajan: allocated to STPMAX_MAX size.
- PARAMETER (STPMAX_MAX= 5)
+C PARAMETER (STPMAX_MAX= 99999999) seems unreasonably high
+ PARAMETER (STPMAX_MAX= 1000000)
PARAMETER (NUMARG_MAX= 500)
C G M T
|
