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#!/bin/sh
# autopkgtest check: build and run with default test data
# Author: Tatiana Malygina <merlettaia@gmail.com>
set -e
pkg=profphd-utils
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cd $AUTOPKGTEST_TMP
cp -a /usr/share/doc/${pkg}/examples/* .
find . -type f -name "*.gz" -exec gunzip \{\} \;
for lnk in `find . -type l -name "*.gz"` ; do
ln -s `basename $(readlink $lnk) .gz` `echo $lnk | sed 's/\.gz$//'`
rm $lnk
done
# NOTE: following commands were used because convert_seq works in interactive
# mode. Each `\n` means enter and corresponds to moving forward to next command.
# Thus, following calls emulate interactive mode.
# As stated in man page, program writes output to STDOUT.
# It means that in normal situation no errors should be produced.
echo "1ppt.hssp\nm\n\n\n\n" | convert_seq
[ -s 1ppt.msf ]
echo "1ppt.hssp\ny\n\n\n\n" | convert_seq
[ -s 1ppt.phy ]
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