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dnl Process this file with autoconf to produce a configure script.
AC_PREREQ([2.59])
AC_INIT(mauveAligner, 1.2.0)
AC_CONFIG_SRCDIR([src/mauveAligner.cpp])
AC_CONFIG_AUX_DIR(config)
dnl Get the target and build system types and add appropriate options
AC_CANONICAL_TARGET
AM_INIT_AUTOMAKE([no-define])
AM_CONFIG_HEADER([src/config.h])
AC_PREFIX_DEFAULT(/usr/local)
dnl Override default O2
CFLAGS=${CFLAGS-""}
CXXFLAGS=${CXXFLAGS-""}
dnl Checks for programs.
AC_PROG_CC
AC_PROG_CXX
AC_PROG_INSTALL
AC_PROG_LN_S
dnl Checks for header files.
AC_HEADER_STDC
dnl Check what compiler we're using
AM_CONDITIONAL(ICC, test x$CXX = xicc )
dnl Check for getopt_long
AC_CHECK_FUNC(getopt_long,
[GETOPT_LONG_SYSTEM=""],
[GETOPT_LONG_SYSTEM='getopt.$(OBJEXT) getopt1.$(OBJEXT)']
)
AC_SUBST([GETOPT_LONG_SYSTEM])
dnl Check for getopt
AC_CHECK_FUNC(getopt,
[HAVE_GETOPT="true"],
AC_DEFINE(GETOPT_UNDEFINED,[],"Define this if the system does not provide getopt
()")
)
PKG_CHECK_MODULES(DEPS, libMems >= 1.0.0)
AC_SUBST(DEPS_CFLAGS)
AC_SUBST(DEPS_LIBS)
dnl Mac OS X won't allow static compilation...
STATIC_FLAG="-Wl,--whole-archive -lpthread -Wl,--no-whole-archive"
if ( test "x$target_vendor" = "xapple") then
STATIC_FLAG=""
fi
AC_SUBST(STATIC_FLAG)
dnl Allow debugging compilation
AC_ARG_ENABLE(debug,
[ --enable-debug Turn on debugging],
[case "${enableval}" in
yes) debug=true ;;
no) debug=false ;;
*) AC_MSG_ERROR(bad value ${enableval} for --enable-debug) ;;
esac],[debug=false])
AM_CONDITIONAL(DEBUG, test x$debug = xtrue)
dnl Checks for typedefs, structures, and compiler characteristics.
AC_C_CONST
AC_C_INLINE
dnl AC_C_BIGENDIAN
AC_HEADER_TIME
AC_CHECK_FUNCS([memset])
AC_CHECK_HEADERS([libintl.h])
AC_CHECK_HEADERS([stdlib.h])
AC_CHECK_HEADERS([string.h])
AC_CHECK_HEADERS([strings.h])
AC_CHECK_HEADERS([unistd.h])
AC_CHECK_HEADERS([wchar.h])
AC_FUNC_MALLOC
AC_HEADER_STDBOOL
AC_TYPE_SIZE_T
dnl Checks for library functions.
AC_PROG_GCC_TRADITIONAL
dnl SAVE_LIBRARY_VERSION
AC_SUBST(LIBTOOL_VERSION_INFO)
AC_OUTPUT(Makefile src/Makefile )
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