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// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
// Biozentrum - University of Basel
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
#include <promod3/core/portable_binary_serializer.hh>
#define BOOST_TEST_DYN_LINK
#include <boost/test/unit_test.hpp>
#include <ost/base.hh>
#include <cstdio>
#include <fstream>
BOOST_AUTO_TEST_SUITE( core );
using namespace promod3::core;
enum MyEnum {
ARG, ASN, ASP,
GLN, GLU, LYS,
SER, CYS, CYH,
CYD, MET, TRP,
TYR, THR, VAL,
ILE, LEU, PRO,
CPR, TPR, HSD,
HSE, HIS, PHE,
GLY, ALA, XXX
};
struct MyStruct {
// types used in binaries (as of Jan 21, 2016)
char v_char;
bool v_bool;
int v_int;
uint v_uint;
short v_short;
unsigned short v_ushort;
uint32_t v_uint32_t;
uint64_t v_uint64_t;
MyEnum v_enum;
Real v_Real;
String v_str;
// more for testing
int32_t v_int32_t;
double v_double;
// will be stored less accurately
int32_t i;
uint32_t u;
double d;
void SetValues() {
v_char = 1;
v_bool = true;
v_int = 1;
v_uint = 1;
v_short = 1;
v_ushort = 1;
v_uint32_t = 1;
v_uint64_t = 1;
v_enum = ASP;
v_Real = 1;
v_str = "HELLYEAH";
v_int32_t = 2;
v_double = 0.5;
i = 1;
u = 1;
d = 1;
}
void CheckValues() {
MyStruct s_ref;
s_ref.SetValues();
BOOST_CHECK_EQUAL(v_char, s_ref.v_char);
BOOST_CHECK_EQUAL(v_bool, s_ref.v_bool);
BOOST_CHECK_EQUAL(v_int, s_ref.v_int);
BOOST_CHECK_EQUAL(v_uint, s_ref.v_uint);
BOOST_CHECK_EQUAL(v_short, s_ref.v_short);
BOOST_CHECK_EQUAL(v_ushort, s_ref.v_ushort);
BOOST_CHECK_EQUAL(v_uint32_t, s_ref.v_uint32_t);
BOOST_CHECK_EQUAL(v_uint64_t, s_ref.v_uint64_t);
BOOST_CHECK_EQUAL(v_enum, s_ref.v_enum);
BOOST_CHECK_EQUAL(v_Real, s_ref.v_Real);
BOOST_CHECK_EQUAL(v_str, s_ref.v_str);
BOOST_CHECK_EQUAL(v_int32_t, s_ref.v_int32_t);
BOOST_CHECK_EQUAL(v_double, s_ref.v_double);
BOOST_CHECK_EQUAL(i, s_ref.i);
BOOST_CHECK_EQUAL(u, s_ref.u);
BOOST_CHECK_EQUAL(d, s_ref.d);
}
template <typename DS>
void Serialize(DS& ds) {
// common use (reasonable sizes)
ConvertBaseType<int8_t>(ds, v_char);
ds & v_bool;
ConvertBaseType<int32_t>(ds, v_int);
ConvertBaseType<uint32_t>(ds, v_uint);
ConvertBaseType<int16_t>(ds, v_short);
ConvertBaseType<uint16_t>(ds, v_ushort);
ConvertBaseType<uint32_t>(ds, v_uint32_t);
ConvertBaseType<uint64_t>(ds, v_uint64_t);
ConvertBaseType<int32_t>(ds, v_enum);
ConvertBaseType<float>(ds, v_Real);
ds & v_str;
// store as is (still doing endianness)
ds & v_int32_t;
ds & v_double;
// store some values with less precision
ConvertBaseType<int8_t>(ds, i);
ConvertBaseType<uint8_t>(ds, u);
ConvertBaseType<float>(ds, d);
}
};
BOOST_AUTO_TEST_CASE(test_check_portable_binary) {
// set input struct and sanity check
MyStruct s;
s.SetValues();
s.CheckValues();
// store it
String filename = "mytest.dat";
std::ofstream out_stream(filename.c_str(), std::ios::binary);
PortableBinaryDataSink sink(out_stream);
sink & s;
out_stream.close();
// read it
std::ifstream in_stream(filename.c_str(), std::ios::binary);
PortableBinaryDataSource source(in_stream);
MyStruct s_read;
source & s_read;
in_stream.close();
// check
s_read.CheckValues();
// clean up
std::remove(filename.c_str());
}
BOOST_AUTO_TEST_SUITE_END();
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