File: modelling_all.py

package info (click to toggle)
promod3 3.4.2%2Bds-1
  • links: PTS, VCS
  • area: main
  • in suites: trixie
  • size: 966,596 kB
  • sloc: cpp: 55,820; python: 18,058; makefile: 85; sh: 51
file content (12 lines) | stat: -rw-r--r-- 334 bytes parent folder | download | duplicates (3) 
1
2
3
4
5
6
7
8
9
10
11
12
 
from ost import io
from promod3 import modelling

# get raw model
tpl = io.LoadPDB('data/1crn_cut.pdb')
aln = io.LoadAlignment('data/1crn.fasta')
aln.AttachView(1, tpl.CreateFullView())
mhandle = modelling.BuildRawModel(aln)

# build final model
final_model = modelling.BuildFromRawModel(mhandle)
io.SavePDB(final_model, 'model.pdb')