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// Copyright (c) 2013-2023, SIB - Swiss Institute of Bioinformatics and
// Biozentrum - University of Basel
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
#include <boost/python.hpp>
#include <promod3/modelling/afdb.hh>
using namespace ost;
using namespace boost::python;
using namespace promod3::modelling;
namespace {
void WrapSeqToPentamerIndices(const String& sequence, bool unique,
boost::python::list& l) {
std::vector<int> indices;
SeqToPentamerIndices(sequence, unique, indices);
for(size_t i = 0; i < indices.size(); ++i) {
l.append(indices[i]);
}
}
}
void export_afdb()
{
def("SeqToPentamerIndices", &WrapSeqToPentamerIndices, (arg("sequence"),
arg("unique"),
arg("result_list")));
def("CreateAFDBIdx", &CreateAFDBIdx, (arg("uniprot_ac"), arg("fragment"),
arg("version")));
def("CreatePentaMatch", &CreatePentaMatch, (arg("seq_list"),
arg("db_path"),
arg("entries_from_seqnames")));
}
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