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// Copyright (c) 2013-2020, SIB - Swiss Institute of Bioinformatics and
// Biozentrum - University of Basel
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
#include <boost/python.hpp>
#include <boost/python/suite/indexing/vector_indexing_suite.hpp>
#include <promod3/modelling/gap.hh>
using namespace ost;
using namespace boost::python;
using namespace promod3::modelling;
void export_gap()
{
class_<StructuralGap>("StructuralGap", init<mol::ResidueHandle,
mol::ResidueHandle,
String>((arg("before"),
arg("after"), "seq")))
.def(init<const StructuralGap&>())
.def("GetChainIndex", &StructuralGap::GetChainIndex)
.def("GetChainName", &StructuralGap::GetChainName)
.def("GetChain",&StructuralGap::GetChain)
.def("IsCTerminal", &StructuralGap::IsCTerminal)
.def("IsNTerminal", &StructuralGap::IsNTerminal)
.def("IsTerminal", &StructuralGap::IsTerminal)
.def("ShiftCTerminal", &StructuralGap::ShiftCTerminal)
.def("ExtendAtNTerm", &StructuralGap::ExtendAtNTerm)
.def("ExtendAtCTerm", &StructuralGap::ExtendAtCTerm)
.def("GetLength", &StructuralGap::GetLength)
.def("Copy", &StructuralGap::Copy)
.def("Transfer", &StructuralGap::Transfer)
.add_property("length", &StructuralGap::GetLength)
.def_readonly("seq", &StructuralGap::sequence)
.def_readonly("before", &StructuralGap::before)
.def_readonly("after", &StructuralGap::after)
.add_property("full_seq", &StructuralGap::GetFullSeq)
.def(self_ns::str(self))
;
class_<StructuralGapList>("StructuralGapList", init<>())
.def(vector_indexing_suite<StructuralGapList>())
;
}
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