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#!/bin/bash
set -e
pkg=pscan-tfbs
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
gunzip -r *
echo 'Test 1'
pscan-tfbs -p sample.fasta -l example_matrix_file.wil
cat sample.short_matrix
echo 'PASS'
echo 'Test 2'
pscan-tfbs -p sample.fasta -l example_matrix_file.wil -N NFY
cat sample.short_matrix
echo 'PASS'
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