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use ExtUtils::MakeMaker;
use lib '../lib';
use Bio::Tools::PSort::Install;
my $CC = 'g++';
@libs = qw/hmmer squid/;
%paths = ();
$libpath = '-lm -lpthread -lstdc++';
$defaults_file = '../psortb.defaults';
if( -f $defaults_file ) {
unless ($return = do $defaults_file) {
warn "couldn't parse $file: $@" if $@;
warn "couldn't do $file: $!" unless defined $return;
warn "couldn't run $file" unless $return;
}
do $defaults_file;
}
if($additional_libpath) {
$libpath .= ' ' . $additional_libpath . ' ' . join(' ', map { '-l' . $_ } @libs);
} else {
$libpath .= Bio::Tools::PSort::Install->makeLibPath(@libs);
}
WriteMakefile('NAME' => 'Algorithm::HMM',
'VERSION_FROM' => 'lib/Algorithm/HMM.pm',
'PREREQ_PM' => {},
($] >= 5.005 ?
(ABSTRACT_FROM => 'lib/Algorithm/HMM.pm',
AUTHOR => 'Cory Spencer <cspencer@sfu.ca>') : ()),
'LIBS' => $libpath,
'CC' => $CC,
'LD' => '$(CC)',
'INC' => '-Isrc/include `pkg-config --cflags libsquid` `pkg-config --cflags libhmmer2`',
'OBJECT' => "HMM.o hmm-binding.o",
'XSOPT' => '-C++',
);
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