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Description: Add missing header files
The patch also complements the funcs.h header file so the Perl XS file
knows what find_helices is. For the record, it is defined in
libmodhmm-dev, there is probably some much needed cleanup to do).
Bug-Debian: https://bugs.debian.org/1070459
Author: Andreas Tille <tille@debian.org>
Reviewed-By: Étienne Mollier <emollier@debian.org>
Last-Update: 2024-05-06
--- psortb.orig/bio-tools-psort-modhmm/binding.c
+++ psortb/bio-tools-psort-modhmm/binding.c
@@ -1,4 +1,5 @@
#include <stdio.h>
+#include <stdlib.h>
#include "modhmm0.92b/structs.h"
--- psortb.orig/bio-tools-psort-modhmm/modhmm0.92b/funcs.h
+++ psortb/bio-tools-psort-modhmm/modhmm0.92b/funcs.h
@@ -300,3 +300,6 @@
void dump_subst_mtx(int a_size, double *mtx);
void dump_multi_modules(struct hmm_multi_s *hmmp);
void dump_weights(double *total_weights, int nr_seqs);
+
+/* hmmsearch */
+int find_helices(char* seq, char* hmmfilename, char* repfilename, char* path);
--- psortb.orig/bio-tools-psort-modhmm/modhmm.xs
+++ psortb/bio-tools-psort-modhmm/modhmm.xs
@@ -2,6 +2,7 @@
#include "perl.h"
#include "XSUB.h"
#include "modhmm0.92b/structs.h"
+#include "modhmm0.92b/funcs.h"
MODULE = Bio::Tools::PSort::ModHMM PACKAGE = Bio::Tools::PSort::ModHMM
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