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Description: Remove source from bundled libsvm and adjust build system.
.
Change by Steve Langasek enables build with -Wl, --as-needed
Author: Carnë Draug <carandraug+dev@gmail.com>
Steve Langasek <steve.langasek@ubuntu.com>
Last-Update: 2018-04-09
Bug-Debian: https://bugs.debian.org/895344
--- a/bio-tools-psort-svmloc/MANIFEST
+++ b/bio-tools-psort-svmloc/MANIFEST
@@ -8,5 +8,4 @@ bindings.h
lib/Bio/Tools/PSort/SVMLoc.pm
sample.model
fre_patterns.txt
-libsvm.h
typemap
--- a/bio-tools-psort-svmloc/Makefile.PL
+++ b/bio-tools-psort-svmloc/Makefile.PL
@@ -9,7 +9,7 @@ $CC = 'g++';
@libs = qw/svmloc/;
%paths = ();
-$libpath = '-lm -lstdc++';
+$libpath = '-lm -lsvm -lstdc++';
$defaults_file = '../psortb.defaults';
if( -f $defaults_file ) {
@@ -24,7 +24,7 @@ if( -f $defaults_file ) {
if($additional_libpath) {
$libpath .= ' ' . $additional_libpath . ' ' . join(' ', map { '-l' . $_ } @libs);
} else {
- $libpath .= Bio::Tools::PSort::Install->makeLibPath(@libs);
+ $libpath = Bio::Tools::PSort::Install->makeLibPath(@libs) . " " . $libpath;
}
if($^O eq 'cygwin') {
--- a/bio-tools-psort-svmloc/bindings.h
+++ b/bio-tools-psort-svmloc/bindings.h
@@ -9,7 +9,9 @@
#include <set>
#include <assert.h>
-#include "libsvm.h"
+#include <stdlib.h>
+#include <string.h>
+#include <libsvm/svm.h>
using namespace std;
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