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#!/usr/bin/env python
#
# Copyright (C) 2008 Tobias Wolf <towolf@tuebingen.mpg.de>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
"""
PTB-wikify.py: Submit help strings in .m-files to a Wikka Installation
Usage: PTB-wikify.py [options] ([m-files]|[directory])
Options:
-h, --help
-u ..., --username ... login to WikkaWiki with this UserName
-p ..., --password ... use this Wikka password
-U ..., --URL root URL of the Wiki in the form
http://doc.psychtoolbox.org/ (w/ terminal slash)
-r, --recursive recursive mode: use only with a single directory
-m, --mexmode mex mode: also look for .mexmaci files and post their
help strings by calling MATLAB and running them
In recursive mode both M and Mex files are posted.
(edit the source to change _mexext into one of
.mexglx, .mexmaci, or .dll)
-v be verbose (massive text output)
this prints out:
- which files were skipped
- a diff of the text before submission
-f --full-diff output full ndiff (default is a terse unified diff).
The ndiff contains all text but is easier
to parse visually for differences.
(only in combination with -v)
Examples:
PTB-wikify.py -u DocBot -p dokkbot -U http://wiki/ PsychBasic/*.m
PTB-wikify.py -r -m -U http://wiki/ PsychBasic/
IMPORTANT!!:
Always change your working directory to the root of the
tree before running the script, e.g.,
cd Psychtoolbox
~/PTB-wikify.py -r PsychDemos/PsychExampleExperiments
(This is to figure out what the root node is supposed to be.)
"""
import sys, os, re, subprocess
import getopt
from urllib2 import HTTPError
import mechanize
assert mechanize.__version__ >= (0, 0, 6, "a")
import textwrap
from BeautifulSoup import BeautifulSoup, Tag, NavigableString
baseurl = "http://docs.psychtoolbox.org/wikka.php?wakka="
username = "DocBot"
password = ""
_recursive = 0
_mexmode = 0
_mexext = '.mexa64'
_debug = 0
_fulldiff = 0
global mech
mech = mechanize.Browser()
def parse(filename):
'''Parse helpful initial comment block from .m-file'''
docstring = []
functionellipsized = False
for line in open(filename,'rU'):
# weird hack
if line.strip()[0:8] + line.strip()[-3:] == 'function...':
functionellipsized = True
if line.strip().startswith('%'): # get comment lines
docstring.append(line)
elif len(docstring): break # and stop after one block
# we allow empty lines and the function def before the block
elif len(line.strip()) > 0 \
and not line.strip().startswith('function')\
and not functionellipsized: break
# strip first two chars: '% '
return textwrap.dedent(''.join([l[1:] for l in docstring]))
def beackern(mkstring):
'''Regex cleaning of PTB docstrings'''
# expand tabs to four spaces
mkstring = mkstring.expandtabs(4)
# Enclose text markup characters with: ""
mkstring = re.sub(r'(\+\+|(--){2}\b|==|\'\'|@@|[^:]//|>>|<<|##)',r'""\1""',mkstring)
# Replace 'Windows: ______' with headline
mkstring = re.sub(r'(?m)^(.*):\s*[_-]{3,}',r'=== \1 ===',mkstring)
# Replace long _______ with ---- i.e.<HR>
mkstring = re.sub(r'(?m)^\s*_{10,}',r'----',mkstring)
# Replace some non-WikiWord function to internal links
match = r'(\bScreen\b|' \
+ r'\bAsk\b|' \
+ r'\bBandpass\b|' \
+ r'\bBeeper\b|' \
+ r'\bCircle\b|' \
+ r'\bClose\b|' \
+ r'\bComputeDKL_M\b|' \
+ r'\bDKLDemo\b|' \
+ r'\bEllipse\b|' \
+ r'\bExpand\b|' \
+ r'\bExplode\b|' \
+ r'\bFlip\b|' \
+ r'\bGestalt\b|' \
+ r'\bGStreamer\b|' \
+ r'\bIOPort\b|' \
+ r'\bInterleave\b|' \
+ r'\bM_PToP\b|' \
+ r'\bM_PToT\b|' \
+ r'\bM_TToP\b|' \
+ r'\bM_TToT\b|' \
+ r'\bOSAUCSTest\b|' \
+ r'\bOSName\b|' \
+ r'\bPriority\b|' \
+ r'\bPsychometric\b|' \
+ r'\bRandi\b|' \
+ r'\bRanint\b|' \
+ r'\bReplace\b|' \
+ r'\bResolute\b|' \
+ r'\bRush\b|' \
+ r'\bSample\b|' \
+ r'\bScale\b|' \
+ r'\bShuffle\b|' \
+ r'\bSnd\b|' \
+ r'\bStopwatch\b|' \
+ r'\bTrunc\b|' \
+ r'\bXYZTouv\b|' \
+ r'\bhexstr\b|' \
+ r'\bmoglmorpher\b|' \
+ r'\bpsychassert\b|' \
+ r'\bpsychlasterror\b|' \
+ r'\bpsychrethrow\b|' \
+ r'\bsca\b|' \
+ r'\buvTols\b|' \
+ r'\buvToxy\b|' \
+ r'\buvYToXYZ\b|' \
+ r'\bxyTouv\b|' \
+ r'\bxyYToXYZ\b|' \
+ r'\log10nw\b|' \
+ r'\bPreference\b)'
mkstring = re.sub(match,r'[[\1]]',mkstring)
# purge useless help lines
mkstring = re.sub(r'(?m)^.*triple-click me & hit enter.*$\n','',mkstring)
# Generate more headlines (Word:$, CAPITAL LETTERS$, etc)
mkstring = re.sub(r'(?m)((?<=\n\n).+:((?=\s*\n\n)+))', r'=== \1 ===',mkstring)
mkstring = re.sub('(?m)((?<=\n\n)\ *[A-Z][A-Z :!-]+\ *(?=\n))', r'=== \1 ===',mkstring)
return mkstring
def login(baseurl,username,password):
try:
mech.open(baseurl + "UserSettings")
except HTTPError, e:
sys.exit("%d: %s" % (e.code, e.msg))
# important: use correct form number in the HTML page
mech.select_form(nr=1)
mech["name"] = username
mech["password"] = password
try:
mech.submit()
except HTTPError, e:
sys.exit("login failed: %d: %s" % (e.code, e.msg))
def makediff(old,new):
import difflib, time
if not _fulldiff:
dm = difflib.unified_diff
else:
dm = difflib.ndiff
old = re.sub('\015\012',r'\n',old).expandtabs(4)
diff = dm(old.splitlines(1), new.splitlines(1))
difftext = ''.join(diff)
return difftext
def post(title,text):
'''Browse to the Wiki, select the form, diff it, and post text'''
title = re.sub("[^\w]|_","",title)
try:
resp = mech.open(baseurl+title+"/edit")
except HTTPError, e:
sys.exit("post failed: %d: %s" % (e.code, e.msg))
mech.select_form(nr=1)
try:
oldbody = mech["body"]
except:
print 'No id="body" form. Figure this out first. cf. page text above.'
for form in mech.forms():
print form
sys.exit("post failed while processing page: " + baseurl + title +'/edit')
# manual override when text contains <!--protected-->
if oldbody.find('<!--protected-->')>0:
print 'skipped protected page ' + title
return
# generate diff and output the diffstat
diff = makediff(oldbody,text)
if diff:
minus = str([l.startswith('-') for l in diff.splitlines() \
if not l.startswith('---')].count(True))
plus = str([l.startswith('+') for l in diff.splitlines() \
if not l.startswith('+++')].count(True))
if plus == '0' and minus == '0':
changes = ' (nc+)'
else:
changes = ' ('+plus+' insertions(+), '+minus+' deletions(-))'
print "posting: " + title + changes
if _debug: print diff
else:
print "posting: " + title + ' (nc)'
mech["body"] = text
try:
mech.submit()
except HTTPError, e:
sys.exit("post failed: %d: %s" % (e.code, e.msg))
def postsinglefiles(files):
''' create pages for all files in there and link to the category'''
for name in files:
# single out some names
head, basename = os.path.split(name)
root = os.path.join(os.path.basename(os.getcwd()))
path = os.path.normpath(os.path.join(root,head))
funcname, ext = os.path.splitext(basename)
category = os.path.basename(head)
cattext = ''
if not os.path.exists(name) or not ext=='.m':
if _mexmode and ext == _mexext:
mexhelpextract([funcname])
elif _debug: print 'skipping ' + name
continue
if basename=='Contents.m' or basename=='contents.m':
funcname = category
path = os.path.dirname(path)
if len(path) < 3:
continue
cattext = '{{category}}'
# load and build the text for the page
headline = "===[[" + funcname + "]]===\n"
breadcrumb = "==[[" + re.sub("/","]] › [[", path) + "]]==\n\n"
# read the .m-file and strip all the crap
docstring = parse(name)
# scrub the text real good, to get us some nice wiki formatting
if docstring:
body = beackern(docstring)
else:
body = 'Adrian, this function is not yet documented.\n\n\n MissingDocs'
pathlinks = """
""
<div class="code_header" style="text-align:right;">
<span style="float:left;">Path </span> <span class="counter">Retrieve <a href=
"https://raw.github.com/Psychtoolbox-3/Psychtoolbox-3/beta/%s">current version from GitHub</a> | View <a href=
"https://github.com/Psychtoolbox-3/Psychtoolbox-3/commits/beta/%s">changelog</a></span>
</div>
<div class="code">
<code>%s</code>
</div>
""
""" % tuple([os.path.join(path,basename)]*3)
text = headline \
+ breadcrumb \
+ body \
+ '\n\n\n' \
+ textwrap.dedent(pathlinks) \
+ '\n' \
+ cattext
post(funcname,text)
def mexhelpextract(mexnames):
#print 'processing mex files: ' + mexnames.__repr__()
from ConfigParser import RawConfigParser as ConfigParser, Error as error
for mexname in mexnames:
# ConfigParser for the three elements per subfunctions written to tmpdir
# [SubFunction]
# usage: 'xyz'
# help: 'xyz'
# seealso: 'xyz'
config = ConfigParser({'usage':[], 'help':[], 'seealso':[]})
# assemble command line for matlab
matlabcmd = 'addpath(\'%s\');%s(\'%s\',\'%s\'); exit' % \
(_tmpdir, \
os.path.splitext(os.path.basename(_mexscript))[0], \
mexname, \
_tmpdir)
cmd = 'matlab -nojvm -nodisplay -r "%s" > /dev/null' % matlabcmd
# and execute matlab w/ the temporary script we wrote earlier
try:
print 'running MATLAB for %s in %s' % (mexname,_tmpdir)
p = subprocess.Popen(cmd, shell=True, stdin=subprocess.PIPE, stdout=subprocess.PIPE,
stderr=subprocess.STDOUT, close_fds=True)
stderr = p.communicate()[1]
if stderr: print stderr
except:
print 'could not dump help for %s into %s.' % (mexname,_tmpdir)
cfgfile = config.read(os.path.join(_tmpdir,mexname))
if cfgfile == []:
print "skipping " + mexname + " (no output)"
continue
subfunctions = config.sections()
print 'processing subfunctions: ' + subfunctions.__repr__()
for subfunction in subfunctions:
# read in the strings for this subfunction
usage = config.get(subfunction,'usage')
help = config.get(subfunction,'help')
seealso = config.get(subfunction,'seealso')
headline = '===[['+subfunction+' '+mexname+'(\''+subfunction+'\')]]===\n'
breadcrumb = "==[[Psychtoolbox]] › [[" \
+ mexname + "]].{mex*,dll} subfunction==\n\n"
# scrub the text for main text only
body = beackern(help)
docstring = '' \
+ '%%(matlab;Usage)' \
+ usage \
+ '%%\n' \
+ body \
+ '\n\n'
if seealso:
docstring = docstring + '<<=====See also:=====\n' + seealso + '<<'
text = '""' + headline \
+ breadcrumb \
+ docstring + '""'
# retrieve old body text, to update or concatenate with synonymous subfunctions
#
# browse the page
title = re.sub("[^\w]|_","",subfunction)
try:
resp = mech.open(baseurl+title+"/edit")
except HTTPError, e:
sys.exit("retrieving old text during posting of this mex function failed: %d: %s" % (e.code, e.msg))
# get text from the edit form
mech.select_form(nr=1)
try:
oldbody = mech["body"]
except:
print 'No id="body" form. Figure this out first. cf. page text above.'
for form in mech.forms():
print form
sys.exit("retrieving old body text failed while processing page: " + baseurl + title +'/edit')
# parse embedded structuring HTML tags in the wiki text
soup = BeautifulSoup(oldbody)
# check if the subfunction is already present, by CSS 'class' and 'id'
subfct = soup.find('div', {'class' : "subfct", 'id' : mexname})
if subfct:
# replace the text of the container DIV
subfct.contents[0].replaceWith(text)
else:
# construct new DIV to hold the text
subfctDIV = Tag(soup, "div")
subfctDIV['class'] = 'subfct'
subfctDIV['id'] = mexname
subfctDIV.insert(0,NavigableString(text))
# insert the new div
soup.insert(len(soup),subfctDIV)
# Now scoop the good well-formed divs out of the soup
divs = soup('div', {'class' : "subfct"})
# and drop them into fresh yummy cheese soup
cheesesoup = BeautifulSoup()
# drop good divs into the soup, one by one
for div in divs:
# remove the unneeded style attribute, we finally
# have this stuff defined in the ptbdocs.css now.
del(div['style'])
# escape the HTML tags for wiki parser
cheesesoup.append(NavigableString('\n""'))
cheesesoup.append(div)
cheesesoup.append(NavigableString('""\n'))
post(subfunction,cheesesoup.renderContents())
def recursivewalk(rootfolder):
'''traverse the root directory and post all .m-files'''
for root, dirs, files in os.walk(rootfolder):
if re.search(os.sep+'\.svn|'+os.sep+'private',root):
continue
print 'Entering folder ' + root
# .m-files are processed with postsinglefiles
mfiles = [os.path.join(root,f) for f in files \
if f[-2:] in ('.m','.M')]
postsinglefiles(mfiles)
# mex files are processed via matlab
if _mexmode:
mexnames = [os.path.splitext(f)[0] for f in files \
if f[-len(_mexext):].lower() == _mexext]
mexhelpextract(mexnames)
print "Exiting: Done with this tree."
sys.exit(0)
def usage():
print __doc__
def main(argv):
try:
opts, args = getopt.getopt(argv, "hu:p:U:frmv", \
["help", "username=", "password=", "url=", "full-diff", "mexmode", "recursive"])
except getopt.GetoptError:
usage()
sys.exit(2)
for opt, arg in opts:
if opt in ("-h", "--help"):
usage()
sys.exit()
elif opt in ("-u", "--username"):
global username
username = arg
elif opt in ("-p", "--password"):
global password
password = arg
elif opt in ("-U", "--url"):
global baseurl
baseurl = arg
elif opt in ("-f", "--full-diff"):
global _fulldiff
_fulldiff = 1
elif opt in ("-r", "--recursive"):
global _recursive
_recursive = 1
elif opt in ("-m", "--mexmode"):
import tempfile
global _mexmode, _mexext, _tmpdir, _mexscript
_mexmode = 1
_tmpdir = tempfile.mkdtemp(prefix="PTB-doc-mexfunctionhelp-")
_mexscript = os.path.join(_tmpdir, 'PsychtoolboxMexhelpextract.m')
fid = open(_mexscript, 'w')
script = '''\
function PsychtoolboxMexhelpextract(mexname,tmpdir)
try
subfunctions=eval([mexname '(''DescribeModulefunctionshelper'')']);
catch
return;
end
try
if isempty(subfunctions)
return;
end
if ~iscell(subfunctions)
return;
end
catch
return;
end
fid = fopen(fullfile(tmpdir,mexname),'wt');
if fid == -1
return;
end
try
for i=1:size(subfunctions,2)
fprintf(fid,'[%s]\\n\\n',subfunctions{i});
docs = eval([mexname '(''DescribeModulefunctionshelper'',1,subfunctions{i})']);
fprintf(fid,'usage: %s\\n\\n',docs{1});
fprintf(fid,'help: %s\\n\\n',regexprep(docs{2},'\\n','\\n '));
fprintf(fid,'seealso: %s\\n\\n',docs{3});
end
catch
% Nothing to do.
end
fclose(fid);
return
'''
fid.write(textwrap.dedent(script))
fid.close()
elif opt == '-v':
global _debug
_debug = 1
if len(password) == 0:
usage()
print 'Error: No default password set. Please specify one with -p MyPassword.\n\n'
sys.exit(1)
else:
login(baseurl,username,password)
if args:
if _recursive:
if len(args) == 1 and os.path.isdir(args[0]):
recursivewalk(args[0])
else:
usage()
print 'Error: Recursive mode works with one directory only\n\n'
sys.exit(1)
else:
postsinglefiles(args)
else:
usage()
print 'Error: No files specified to submit to Wiki\n\n'
sys.exit(1)
if __name__ == "__main__":
main(sys.argv[1:])
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