1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
|
.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.16.
.TH SEQDIFF "1" "March 2021" "seqdiff 1.0.2" "User Commands"
.SH NAME
seqdiff \- <short_description>
.SH DESCRIPTION
seqdiff \- a bioinformatics tool for comparing sequences in two files
.PP
(Written by bct \- 2013)
Usage:
seqdiff \fB\-1\fR <first input fasta/fastq file> \fB\-2\fR <second fasta/fastq file>
.IP
Options:
.TP
\fB\-1\fR, \fB\-\-first\fR,
First sequence file (required)
.TP
\fB\-2\fR, \fB\-\-second\fR,
Second sequence file (required)
.TP
\fB\-a\fR, \fB\-\-a_output\fR,
File name for uniques from first file
.TP
\fB\-b\fR, \fB\-\-b_output\fR,
File name for uniques from second file
.TP
\fB\-c\fR, \fB\-\-c_output\fR,
File name for common entries
.TP
\fB\-d\fR, \fB\-\-headers\fR,
Compare headers instead of sequences (default: false)
.HP
\fB\-s\fR, \fB\-\-summary\fR, Just show summary stats? (default: false)
.TP
\fB\-h\fR, \fB\-\-help\fR,
Display this help and exit
.TP
\fB\-v\fR, \fB\-\-verbose\fR,
Print extra details during the run
.TP
\fB\-\-version\fR,
Output version information and exit
.SH AUTHOR
This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.
|
