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PVM version 3.4: Parallel Virtual Machine System
University of Tennessee, Knoxville TN.
Oak Ridge National Laboratory, Oak Ridge TN.
Emory University, Atlanta GA.
Authors: J. J. Dongarra, G. E. Fagg, G. A. Geist,
J. A. Kohl, R. J. Manchek, P. Mucci,
P. M. Papadopoulos, S. L. Scott, and V. S. Sunderam
(C) 2009 All Rights Reserved
NOTICE
Permission to use, copy, modify, and distribute this software and
its documentation for any purpose and without fee is hereby granted
provided that the above copyright notice appear in all copies and
that both the copyright notice and this permission notice appear in
supporting documentation.
Neither the Institutions (Emory University, Oak Ridge National
Laboratory, and University of Tennessee) nor the Authors make any
representations about the suitability of this software for any
purpose. This software is provided ``as is'' without express or
implied warranty.
PVM version 3 was funded in part by the U.S. Department of Energy,
the National Science Foundation and the State of Tennessee.
________________________________________________________________________
WHAT IS PVM?
PVM is a software system that enables a collection of heterogeneous
computers to be used as a coherent and flexible concurrent computational
resource, or a "parallel virtual machine".
The individual computers may be shared- or local-memory multiprocessors,
vector supercomputers, specialized graphics engines, or scalar
workstations and PCs, that may be interconnected by a variety of
networks, such as Ethernet or FDDI.
PVM consists of a run-time environment and library for message-passing,
task and resource management, and fault notification. While PVM will
not automatically make a commercial software package run faster, it
*does* provide a powerful set of functions for manually parallelizing
an existing source program, or for writing new parallel / distributed
programs.
The PVM software must be specifically installed on every machine that
is to be used in your "virtual machine". There is no "automatic"
installation of executables onto remote machines in PVM, although
simply copying the pvm3/lib and pvm3/bin directories to another
*similar* machine (and setting $PVM_ROOT and $PVM_ARCH - see below)
is sufficient for running PVM programs. Compiling or building PVM
programs requires the full PVM installation.
User programs written in C, C++ or Fortran can access PVM through
provided library routines.
________________________________________________________________________
UNPACKING
This distribution contains source code, some simple examples, and
run-time support for PVM version 3. The documentation for PVM can
be obtained separately from Netlib. To get a list of available
subsets, send e-mail to "netlib@ORNL.GOV" with the subject:
"send index from pvm3".
The files in the source distribution unpack into a "pvm3" directory.
The pvm3 directory can reside in either a private or shared disk area.
Installations for multiple machine architectures can coexist in the
same shared filesystem because compiled files are placed in different
subdirectories named for each architecture ($PVM_ARCH).
Some of the more important directories are:
Directory Contains
---------------------------------------------------------------
bin/$PVM_ARCH/ PVM user program executables (examples & your programs)
conf/ Make configuration files for all PVM architectures
console/ Source for the pvm console
doc/ Miscellaneous documentation
examples/ Example PVM programs source files
gexamples/ More example PVM programs - for group library
hoster/ An example "hoster" program
include/ Header files for PVM programs
lib/ Generic system executables (scripts, rc file stubs)
lib/$PVM_ARCH/ System executables (PVM daemon, console, etc.)
libfpvm/ Source for the libfpvm Fortran library
man/man[13]/ Online manual pages (nroff format)
misc/ Some miscellaneous PVM examples and utilities
patches/ Patch files and instructions, as they are released
pvmgs/ Source for the libgpvm library and group nameserver
rm/ An example resource manager for PVM
shmd/ A special daemon for shared memory systems (*MP)
src/ Source for the libpvm library and PVM daemon
src/$PVM_ARCH/ Additional source code for specific machines
tasker/ An example "tasker" program for PVM
tracer/ An example "tracer" program for PVM
xep/ An example interactive X-Window program
BUILDING AND INSTALLING
To build the full PVM software, you will need to have a "make" utility,
a C or C++ compiler, and a Fortran compiler installed on your system.
Before building or running PVM, you must set the environment variable
"PVM_ROOT" to the path where PVM resides, i.e. the path of the
directory with this "Readme" file. This can be in a private area,
for example $HOME/pvm3, or a public one, such as /usr/local/pvm3.
If your shell is "csh", add a line such as:
setenv PVM_ROOT $HOME/pvm3
to your .cshrc file. If you use "ksh" or "bash" shells,
then add the following lines to that shell's startup file,
i.e. $HOME/.kshrc or $HOME/.bashrc, respectively:
PVM_ROOT=$HOME/pvm3
export PVM_ROOT
(NOTE: If you use "bash", please do _Not_ put PVM environment
settings into $HOME/.profile, as it is _Not_ sourced on remote
shell invocations - *Always Use $HOME/.bashrc*...! :-)
The use of this variable and others is explained more fully in the
pvm_intro man page.
You can also include an appropriate shell startup file stub to set
other PVM environment variables and to add PVM directories to your
execution path. Insert the matching stub file, pvm3/lib/cshrc.stub,
pvm3/lib/kshrc.stub or pvm3/lib/bashrc.stub, after your declaration
of PVM_ROOT in your shell startup file (e.g. copy the lines from the
stub file _into_ your $HOME/.cshrc or $HOME/.kshrc or $HOME/.bashrc
file, respectively, and uncomment the stuff you want... :-).
To build PVM for your system, type "make" in this directory. Make
will use the "aimk" in the pvm3/lib directory to build the daemon
executable (pvmd3), the C library (libpvm3.a), the Fortran library
(libfpvm3.a) and the console client program (pvm).
The libraries and executables are installed in $PVM_ROOT/lib/$PVM_ARCH,
where $PVM_ARCH is the host architecture name, e.g. "CRAY" or "LINUX".
If you have problems compiling PVM on your system, check the
architecture-specific configuration file:
$PVM_ROOT/conf/$PVM_ARCH.def
for comments regarding alternative configurations for your system.
The provided scripts $PVM_ROOT/lib/pvm and $PVM_ROOT/lib/pvmd are
used to start the PVM console and the PVM daemon, respectively.
They determine the machine architecture and run the actual programs
in the $PVM_ROOT/lib/$PVM_ARCH directory. You can either copy these
scripts to your bin directory or add $PVM_ROOT/lib to your shell
search path (using the above *.stub files).
You may wish to add $PVM_ROOT/man to your MANPATH environment variable,
if it's supported on your system. This will allow you to easily read
the online manual pages.
ALTERNATIVES TO RSH
To use "ssh" instead of "rsh" on your system, you can either:
1. Modify the $PVM_ROOT/conf/$PVM_ARCH.def file to change the absolute
path specified for RSHCOMMAND in the ARCHCFLAGS define. Replace the
path to rsh with the absolute path to "ssh" on your system and then
recompile PVM and your applications.
or
2. Set the "PVM_RSH" environment variable to point to the absolute
path to "ssh" on your system. This does not require re-compilation
but must be done in every shell from which PVM is executed. The
"PVM_RSH" environment variable can be set in your $HOME/.cshrc or
equivalent shell startup file to take affect in all new shells.
Once either of these approaches has been applied, the $HOME/.rhosts
file is then no longer necessary for PVM, thereby eliminating a
fundamental security concern. Now, to add PVM hosts (using ssh),
you can either manually enter your password each time you add a
host, or else you can set up an ssh-agent session. (You can always
just use a $HOME/.shosts file, but then you're not much more secure
than with standard rsh...)
When manually entering your password, you will not receive a prompt
from PVM or ssh - the text prompts normally returned by ssh are
automatically captured and written to the local /tmp/pvml.<uid> log
file. However, simply typing your password from inside the "pvm"
console or when running the "pvmd" script will work.
You can bypass this manual password entry for a given session by
executing the following commands (example is for bash, could use
for any shell):
$ ssh-agent bash
$ ssh-add
<now enter your passphrase ONCE>
$ pvm
$ pvm> add host2 . . .
For this to work, you must have run "ssh-keygen" on each host to
create a private/public key pair for your login id. These keys are
typically stored in the $HOME/.ssh directory on each system. The
$HOME/.ssh/identity.pub public key must be copied to each remote
host and added as a line in the $HOME/.ssh/authorized_keys file
on the remote system. When this has been set up, any PVM hosts
can be added without password or passphrase entry using the above
ssh-agent session.
STARTING AND STOPPING PVM
To start PVM, run $PVM_ROOT/lib/pvm. This starts the console task,
which in turn starts a PVM daemon ("pvmd") if one is not already running.
More hosts can be started and added to your "virtual machine" by using
the console "add" command.
To start the pvmd without starting the console, you can also run the
$PVM_ROOT/lib/pvmd directly. A number of hosts can all be started at
once by supplying the pvmd with a host file, as in:
$PVM_ROOT/lib/pvmd my_hosts
where "my_hosts" contains the names of the hosts you wish to add,
one host per line. See the pvmd man page for other host file
options.
To stop PVM, use the PVM console command "halt". From within your
user programs, you can use the pvm_halt() function. You can also
kill the pvmd3 process (always use a catchable signal such as
SIGTERM). But, if you do kill the pvmd, or if it fails for some
other reason, always be sure to remove any leftover /tmp/pvmd.<uid>
pvmd socket files, where <uid> is your numerical user id. These
files will make PVM think a pvmd is running, and can cause the
dreaded "Can't Start Pvmd" message.
For more information about the console commands, see the console "help"
function or the console man page.
TROUBLESHOOTING
If you ever have trouble starting PVM or adding a new host to your
virtual machine, verify that there are no leftover /tmp/pvmd.<uid>
daemon socket files on the machines where you are trying to start
PVM (as described above) and then check the local PVM log file:
/tmp/pvml.<uid>
for any error messages which may help you to determine the problem.
A common problem is caused by restricted access to a remote machine
via "rsh". PVM uses "rsh" to start the pvmd on a remote host. If
you cannot do this:
% rsh remote_host 'echo $PVM_ROOT'
and successfully get back the correct value of $PVM_ROOT on that
remote host, without typing your password, then that is the problem.
You will need to set up permissions on the remote host to allow rsh
access without a password. On Unix systems, this is accomplished
by creating a $HOME/.rhosts file on the *remote* machine that
provides access to your *local* machine. (Note: the $HOME/.rhosts
file is *NOT* a PVM host file...) The format of a $HOME/.rhosts
file is as follows:
your_host_1 your_login_on_host_1
your_host_2 your_login_on_host_2
your_host_3 your_login_on_host_3
. . .
If you get really stuck, try checking the online FAQ off of the
PVM Home Page:
http://www.netlib.org/pvm3/book/node23.html#SECTION00450000000000000000
Master Host IP Address is Loopback!
-----------------------------------
*** If you see "Master Host IP Address is Loopback!" or get the
PvmIPLoopback error when adding hosts, this means that the networking
on your Master PVM host (the one you initially started PVM on) is
not set up correctly for networking to multiple, remote hosts in
your virtual machine. By default, especially on many Linux systems,
your system's host name alias is appended to the 127.0.0.1 loopback,
or localhost, IP address in the /etc/hosts file. This is very useful
for PCs running in stand-alone mode without networking, however this
alias must be removed for interaction with remote hosts in PVM.
The bottom line is that you need to assign a "real" IP address to
your machine's host name in /etc/hosts.
By default, most Linux systems create an entry like this:
127.0.0.1 localhost.localdomain localhost foo
where "foo" is your system's host name.
The problem here is that PVM uses the host name "foo" to look up the
IP address for your system, so PVM gets the localhost "loopback" IP
address (127.0.0.1) by mistake.
You need to create a separate line in /etc/hosts that associates your
host name with its externally recognized IP address:
127.0.0.1 localhost.localdomain localhost
123.45.67.89 foo.your.domain foo
Make sure that you remove any references to your host name / alias
from the 127.0.0.1 line, or else put the new hard-coded IP address
line *before* the localhost line in /etc/hosts...
If you don't want to manually change your /etc/hosts file in this way,
then please see the Linux Networking HOWTO for information on
automatically handling this scenario (via ifup-local and ifdown-local
scripts).
Also keep in mind that you can start PVM using the '-n' flag to select
a specific host name & corresponding IP address, as in:
$ pvm -nfoo
Note that there is no space between the '-n' and your desired host name.
Clusters with Internal and External Networks
--------------------------------------------
If you have a cluster system with an internal network that can't
be seen from outside the cluster, then you may have problems adding
cluster nodes to a virtual machine that was started on the head
cluster node.
The problem is likely related to a mixing of your cluster's internal
versus external networking setup. Your front-end head cluster node
likely has *two* IP addresses, one for the external network, and
one for the internal network. This is a common scenario where the
front-end node that can see both the external network and also
the internal cluster network, but the internal cluster nodes cannot
see the external network.
When you start PVM on the master node, by default it uses the system
host name to look up the network interface and corresponding IP address
(using gethostbyname()). In most cases, this will be the IP address
for the externally visible network interface.
So, when you try to add an internal cluster node from the master,
PVM will initiate the connection using this external IP address,
which the cluster node can't see from inside its private, internal
network. Then PVM will in fact double-check the source IP address
of incoming message packets at the internal cluster nodes, and if
the IP's don't match, it drops the packets (for security reasons).
Therefore, the replies from the cluster nodes' PVM daemons will
never reach the master PVM daemon.
The solution is to start PVM using the *internal* network interface
(and corresponding IP address) on the master node, so that the internal
cluster nodes will correctly recognize the front-end node's IP address
and network packets. This can be accomplished using the '-n' argument
to the "pvm" console, as in:
pvm -nfoo
where "foo" is the master's host name on the internal network.
(Note: there is no space between the '-n' and the 'foo'... :-)
Clearly, for this to work, your front-end master cluster node must
have 2 entries in its /etc/hosts file, one mapping the external IP
address to some externally recognized host name, and there must be
another line with the internal network IP address and a distinct
internal network host name.
You should be aware that running PVM on the master node using the
internal network interface, to enable the internal cluster nodes
to see the master, precludes adding hosts from the external network
to your virtual machine. The master node does *not* act as a gateway
between the internal and external networks in PVM.
Instead, if you really need to include nodes on an external network
in the same PVM virtual machine with your cluster nodes, then you
should use the BEOLIN port of PVM, which uses a single PVM daemon
on the master node and treats the cluster as one computational
resource. (See the pvm3/Readme.Beolin file for information and
usage.)
Hope this helps!
GCC "tmpnam()" Warnings
-----------------------
With the latest versions of gcc, if you get the warning:
"the use of `tmpnam' is dangerous, better use `mkstemp'"
during compilation of PVM, you may safely ignore it. While the
use of tmpnam() for temporary file generation is generally unsafe,
PVM 3.4.6 has now been revamped to _never_ do a straight fopen()
for writing any temporary file - all writing/appending to such
files is done using open() with the O_CREAT and O_EXCL flags.
If the warnings are annoying to you, then please add "-DNOTMPNAM"
to the ARCHCFLAGS definition in your $PVM_ROOT/conf/$PVM_ARCH.def
file, and then "make clean ; make" in $PVM_ROOT.
Enjoy! :-D
APPLICATION PROGRAMS
C, C++ and Fortran programs must be linked with the main PVM library,
$PVM_ROOT/lib/$PVM_ARCH/libpvm3.a, and Fortran programs must also be
linked with the $PVM_ROOT/lib/$PVM_ARCH/libfpvm3.a library file.
User program source files should include the $PVM_ROOT/include/pvm3.h
header file for C/C++ programs, to define PVM constants and function
prototypes. The corresponding Fortran header file is
$PVM_ROOT/include/fpvm3.h.
Executables should be installed in $PVM_ROOT/bin/$PVM_ARCH for a
user installation (where the $PVM_ROOT directory is somewhere in a
user-writable area), and in $HOME/pvm3/bin/$PVM_ARCH for a system-wide
PVM installation (such as /usr/local/pvm3, where the user may not be
able to write to the $PVM_ROOT/bin/$PVM_ARCH directory). The default
execution path can be changed; see the "ep=" option on the pvmd man
page.
When user programs are spawned by PVM, by default they execute in the
$HOME directory of the user. Any input or data files should therefore
reside in or be linked to $HOME. This default working directory
can be changed; see the "wd=" option on the pvmd man page.
CONTACT
The PVM web home page is at
http://www.csm.ornl.gov/pvm/pvm_home.html
A newsgroup, comp.parallel.pvm, exists for discussions about PVM
and help with specific problems.
Please direct any e-mail (questions, bugs, bug fixes, etc.) to:
pvm@msr.CSM.ORNL.GOV
To report bugs or problems with PVM, please see the file
$PVM_ROOT/doc/bugreport .
________________________________________________________________________
Sincerely,
The PVM research group
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