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# Adapted for numpy/ma/cdms2 by convertcdms.py
"""---------------------------------------------------------------------------------------------
INTRODUCTION TO NGMATH
The ngmath library is a collection of interpolators and approximators for one-dimensional, two-dimensional
and three-dimensional data. The packages, which were obtained from NCAR, are:
natgrid -- a two-dimensional random data interpolation package based on Dave Watson's nngridr.
dsgrid -- a three-dimensional random data interpolator based on a simple inverse distance weighting
algorithm.
fitgrid -- an interpolation package for one-dimensional and two-dimensional gridded data based on
Alan Cline's Fitpack. Fitpack uses splines under tension to interpolate in one and two
dimensions.
csagrid -- an approximation package for one-dimensional, two-dimensional and three-dimensional random
data based on David Fulker's Splpack. csagrid uses cubic splines to calculate its
approximation function.
cssgrid -- an interpolation package for random data on the surface of a sphere based on the work of
Robert Renka. cssgrid uses cubic splines to calculate its interpolation function.
shgrid -- an interpolation package for random data in 3-space based on the work of Robert Renka.
shgrid uses a modified Shepard's algorithm to calculate its interpolation function.
COMPARISION OF NGMATH PACKAGES
Three-dimensional packages -- shgrid, csagrid and dsgrid.
shgrid is probably the package of choice for interpolation. It uses a least squares fit of biquadratics
to construct its interpolation function. The interpolation function will pass through the original data
points.
csagrid uses a least squares fit of cubic splines to calculate its approximation function: the calculated
surface will not necesarily pass through the original data points. The algorithm can become unstable in data
sparse regions.
dsgrid uses a weighted average algorithm and is stable in all cases, but the resultant interpolation is
not usually smooth and execution time is very slow. dsgrid is probably best used when csagrid and shgrid
fail or for comparative purposes.
Two-dimensional packages -- natgrid, fitgrid, csagrid and dsgrid.
natgrid is the package of choice in most cases. It implements a very stable algorithm and has parameters
for adjusting the smoothness of the output surface.
fitgrid offers user-settable parameters for specifiying derivatives along the boundary of the output grid
which are not available in natgrid.
csagrid produces an approximate two-dimensional surface which may be smoother than that produced by fitgrid
and natgrid.
dsgrid is not recommended for two-dimensional surfaces. natgrid is superior in all respects.
One-dimensional packages -- fitgrid and csagrid.
fitgrid is definitely the package of choice. It has many features not available in csagrid, such as
interpolating parametric curves, finding integrals, handling periodic functions, allowing smoothing that
varies from linear to a full cubic spline interpolation and specifying slopes at the end points.
Interpolation on a sphere -- cssgrid.
cssgrid is designed specifically for interpolating on a sphere. It uses cubic splines to calculate an
interpolation function.
NATGRID PACKAGE
natgrid implements a natural neighbor interpolation method. The input for the interpolation is a set
of randomly spaced two-dimensional coordinates with functional values at those coordinates; the output is a
set of interpolated values at coordinates in a user specified rectangular grid. The coordinates in the output
grid must be monotonic in each coordinate direction, but need not be evenly spaced. It is also possible to
interpolate at a single point.
natgrid uses a weighted average method that is much more sophisticated than the inverse distance weighted
average used by dsgrid. One distinguishing quality of natural neighbor interpolation is the way in which
a set of neighboring points (the natural neighbor) is selected to use for interpolating at a point. The
natural neighbor selection process avoids the problems common to methods based on choosing a fixed number
of neighboring points, or all points within a fixed distance. Another distinguishing quality of natural
neighbor interpolation is the way that the weights are calculated for the functional values at the natural
neighbor coordinates. These weights are based on proportionate area, rather than distances.
The method of finding the natural neighbors and calculating area-based weights to produce interpolated
values is called natural neighbor linear interpolation. This produces an interpolation surface that has a
continous slope at all points, except at the original input points. The result of natural neighbor linear
interpolation can be visualized as producing a snugly fit sheet stretched over all of the input points.
The interpolation method in natgrid also allows for natural neighbor linear interpolation augmented by
blending in gradient estimates. This is called natural neighbor nonlinear interpolation. It produces an
interpolation surface that has a continuous slope at all locations; two tautness parameters can be set by
the user to control the apparent smoothness of the output surface.
NATGRID CONTENTS
Access through Python to the natgrid package from NCAR's ngmath distribution is provided directly through the module
natgridmodule.so which was generated as a Python C language extension in order to export the natgrid functions
from the original C language library to Python.
REQUIRED FILE
natgridmodule.so -- the Python interface to the ngmath natgrid package.
USEFUL FILES
nat.py -- the object oriented interface including a general help package.
natgridtest.py -- the code to test nat.py and to write documentation.
USAGE
This module is designed to use in two ways. One is through the use of the object oriented interface to the underlying
functions. This approach is recommended for users not already familiar with the original natgrid distribtution because
it simplifies the calls to the routines. The other method uses the original functions calling them directly from Python.
------------------- OBJECT ORIENTED APPROACH ----------------
The nat module contains the Natgrid class and its single method, rgrd, which provides access to all the natgrid
functions. The object oriented approach has been organized as a two step process.
STEP 1.
To make an instance, r, type:
import nat
r = nat.Natgrid(xi, yi, xo, yo)
or
r = nat.Natgrid(xi, yi, xo, yo, listOutput = 'yes')
where xi, yi and xo, yo are the input and output grid coordinate arrays. The optional listOutput must
set to anything except 'no' if xo, yo are in list format as explained below. It is the responsibility
of the user to set listOutput if the output is in the list form.
The input grid must be organized in a list format always. The size of the xi array and the yi array are
necessarily equal. For example, if there are n randomly spaced input data points, there
are n values in xi and n values in yi.
There are two possible formats for the output grid. The output grid coordinate arrays may be a list like
the input array or it may be a rectangular grid. The choice between the two posibilities is made according
to requirements in subseqent calls to the method function. The first choice is required if the subsequent
call is to the single point mode interpolation. The list can have one or more points. Of course, the list
could describe a rectangular grid. For example, a rectangular grid with 10 x values and 20 y values can be
rewrtten in list form with 200 x value and 200 y values. However, this form requires calling the slower
single point interpolator. The second choice is most efficient for the basic interpolation to a rectangular
output grid. The output grid must be monotonic but need not be equally spced.
The grid coordinate arrays can be single precision (numpy.float32) or double precision (numpy.float64). The
decision on whether to call for a single or a double precision computation subsequently is made by looking at
the type of these arrays.
To look at the default settings for the control parameters and a brief description of thier properties, type
r.printDefaultParameterTable()
To change a setting type the new value. For example, to set igr to 1, type
r.igr = 1
To find a value without printing the table, type the name. For example, to exam the value of hor, type
r.hor
To check the settings type
r.printInstanceParameterTable() -- prints in tabular form the parameters used in subsequent calls to the method
function rgrd.
or
printStoredParameters() -- prints the parameters in memory which may differ from the above if the user
has made more than one instance of the Natgrid class.
STEP 2.
natgrid is restricted to two dimensions . Consequently, it is the user's responsibility to reduce the processing of
higher dimensional data to a sequence of calls using only two dimensional data.
The computations are divided into two groups depending on whether the output arrays are in list form or in rectilinear
grid form. If they are in list format the single point mode is called to interpolate to those individual points. This is
the only process possible. On the other hand, if the output goes to a rectangular grid there are more choices. In
addition to carrying out linear and nonlinear interpolations, it is possible to request aspects and slopes. The aspect
at a point on the interpolated surface is the direction of steepest descend. The slope is the value of the partial
derivative taken in the direction of the aspect. The slope is measured as an angle that is zero in a horizonal surface
and positive below the horizontal.
The following examples cover the basic computations. They start with a indication of the appropriate STEP 1.
Example 1: the basic natural neighbor linear interpolation
As STEP 1 make an instance, r, with:
import nat
r = nat.Natgrid(xi, yi, xo, yo)
where the xo, yo grid is rectilinear as explained above in STEP 1.
Then call the primary interpolation computation to regrid the input data, dataIn, on the grid (xi, yi) to
the output data, dataOut, on the grid (xo, yo), with
dataOut = r.rgrd( dataIn )
The computation is either single or double precision as determined by the precision submitted in the grid
description in STEP 1.
It is also possible to request a wrap in the input grid and the input data in the longitude direction, assumed
to be the yi grid coordinate, by adding a keyword as
dataOut = r.rgrd( dataIn, wrap = 'yes' )
Example 2: natural neighbor linear interpolation returning the aspect and the slope.
As STEP 1 make an instance, r, with:
import nat
r = nat.Natgrid(xi, yi, xo, yo)
where the xo, yo grid is rectilinear as explained above in STEP 1.
Then call the primary interpolation computation to regrid the input data, dataIn, on the grid (xi, yi) to
the output data, dataOut, on the grid (xo, yo), while asking for the aspect and the slope on this output grid, with
dataOut, a, s = r.rgrd( dataIn, aspectSlope = 'yes' )
where a is the aspect, the direction of the steepest descent in degrees measured from 'north' and s is the
slope in degrees measured from the horizontal. Necessarily, these are arrays aligned with the rectilinear
output grid, xo, yo.
The computation is either single or double precision as determined by the precision submitted in the grid
description in STEP 1.
It is also possible to request a wrap in the input grid and the input data in the longitude direction, assumed
to be the yi grid coordinate, by adding a keyword as
dataOut, a, s = r.rgrd( dataIn, aspectSlope = 'yes', wrap = 'yes' )
Example 3: the basic natural neighbor nonlinear interpolation
The procedure for the nonlinear interpolation differs from the linear case in the need to set the control
parameter igr. Follow Example 1 and insert the following statament after making the instance, r.
r.igr = 1
Example 4: natural neighbor nonlinear interpolation returning the aspect and the slope.
The procedure for the nonlinear interpolation differs from the linear case in the need to set the control
parameter igr. Follow Example 2 and insert the following statament after making the instance, r.
r.igr = 1
Example 5: single point mode natural neighbor linear interpolation
As STEP 1 make an instance, r, with:
import nat
r = nat.Natgrid(xi, yi, xo, yo, listOutput = 'yes')
where the xo, yo output grid is in the list form (not a rectangular output grid) as explained above in
STEP 1.
To call the single point mode interpolation computation to regrid the input data, dataIn, on the grid (xi, yi)
to the output data, dataOut, on the grid (xo, yo), type
dataOut = r.rgrd( dataIn )
The computation is either single or double precision as determined by the precision submitted in the grid
description in STEP 1. In the single point mode it is not possible to request the aspect and the slope.
Example 6: single point mode natural neighbor nonlinear interpolation
The procedure for the nonlinear interpolation differs from the linear case in the need to set the control
parameter igr. Follow Example 5 and insert the following statament after making the instance, r.
r.igr = 1
------------------- ORIGINAL FUNCTION APPROACH -----------------
The module natgridmodule.so exports the following functions to Python from the original ngmath C library:
Single precision procedures:
natgrids - primary function for gridding.
seti - set int parameter values.
geti - retrieve values for int parameters.
setr - set float parameter values.
getr - retrieve values for float parameters
setc - set char parameter values.
getc - retrieve values for char parameters.
getaspects - get aspect values, if calculated by setting sdi = 1.
getslopes - get slope values, if calculated by setting sdi = 1.
pntinits - initiate single point mode.
pnts - interpolate at a single point.
pntend - terminate single point mode.
Double precision procedures:
natgridd - primary function for gridding.
setrd - set float parameter values.
getrd - retrieve values for float parameters
getaspectd - get aspect values, if calculated by setting sdi = 1.
getsloped - get slope values, if calculated by setting sdi = 1.
pntinitd - initiate single point mode.
pntd - interpolate at a single point.
pntendd - terminate single point mode.
Information on the use of the routines is available by importing natgridmodule and printing the docstring
of interest. For example, documentation for the routine natgrids is obtained by typing
import natgridmodule
print natgridmodule.natgrids.__doc__
This same information is available in the help package.
A description of the control parameters is not in the natgridmodule documentation. It can be found by typing
import nat
nat.printParameterTable()
The documentation associated with the natgridmodule.so, such as the doctrings, describe the C code.
DOCUMENTATION
Documentation is provided through Python's docstrings, essentially Python style program
comments. A help package provides instructions on the use of the natgrid module. A table of contents
is printed to the screen by typing
nat.help()
after importing nat.
A hard copy of all the pertinent 'docstring' documentation written to the file natgridmodule.doc can
be produced by typing
nat.document()
As an alternate to using the help package, online documentation for the natgrids function, for example,
is available directly from the natgrids doctring by typing
import natgridmodule
print natgridmodule.natgrids.__doc__
TESTING
To run a test of the natgrid computations and to get a copy of this documentation, type
cdat natgridtest.py
--------------------------------------------------------------------------------------------------------------"""
from __future__ import print_function
# import string, math, sys, numpy, cdms2, natgridmodule
import string, math, sys, numpy
from . import natgridmodule
# writeTestcase = 'yes'
# try:
# import cdms2
# except ImportError:
# print 'Can not write test case results to netCDF files without module cdms'
# writeTestcase = 'no'
writeTestcase = 'no'
usefilled = 'yes'
try:
import numpy.ma
except ImportError:
print('Can not convert from numpy.ma array to numpy array without module numpy.ma')
usefilled = 'no'
debug = 0
class Natgrid:
#-------------------------------------------------------------------------------------------------------------
#
# Contents of Natgrid class
#
#
# Natgrid class
# __init__ -- initialization
# rgrd -- the regridder called from Python
#
# rgrdPrimary -- called by rgrd if the output grid is montonically increasing
# rgrdSinglePoint -- called by rgrd if the output grid is random or single point mode is selected
# setInstanceParameters -- sets the C values to the instance values
#
#---------------------------------------------------------------------------------------------------------------
def __init__(self, xi, yi, xo, yo, listOutput = 'no'):
""" --------------------------------------------------------------------------------------------------------
routine: __init__ for class Natgrid
purpose: init makes an instance of the Natgrid class while performing the following:
1. checks the argument list for the correct types.
2. selects single or double precision computation.
3. assigns the coordinate grid arrays to self data.
4. assigns default control parameter values from the parameter dictionary.
usage: r = nat.Natgrid(xi, yi, xo, yo)
or
r = nat.Natgrid(xi, yi, xo, yo, listOutput = 'yes')
where xi, yi and xo, yo are the input and output grid coordinate arrays. The optional listOutput is
set to anything except 'no' if xo, yo are in list format as explained below.
The input grid must be organized in a list format always. The size of the xi array and the yi array are
necessarily equal. For example, if there are n randomly spaced input data points, there
are n values in xi and n values in yi.
There are two possible formats for the output grid. The output grid coordinate arrays may be a list like
the input array or it may be a rectangular grid. The choice between the two posibilities is made according
to requirements in subseqent calls to the method function. The first choice is required if the subsequent
call is to the single point mode interpolation. The list can have one or more points. Of course, the list
could describe a rectangular grid. For example, a rectangular grid with 10 x values and 20 y values can be
rewrtten in list form with 200 x value and 200 y values. However, this form requires calling the slower
single point interpolator. The second choice is most efficient for the basic interpolation to a rectangular
output grid. The output grid must be monotonic but need not be equally spced.
Note: the index in the data associated with y varies the fastest.
definition: __init__(self, xi, yi, xo, yo, listOutput = 'no'):
--------------------------------------------------------------------------------------------------------"""
# ---- check the input grid argument list
try:
size = len(xi)
except:
msg = 'CANNOT CREATE INSTANCE - The first argument must be an array'
raise TypeError(msg)
if size < 4:
msg = 'CANNOT CREATE INSTANCE - The length of the input x coordindate grid must be greater than 3'
raise ValueError(msg)
try:
size = len(yi)
except:
msg = 'CANNOT CREATE INSTANCE - The third argument must be an array'
raise TypeError(msg)
if size < 4:
msg = 'CANNOT CREATE INSTANCE - The length of the input y coordindate grid must be greater than 3'
raise ValueError(msg)
# set the self data for the input grid
self.nxi = len(xi)
self.nyi = len(yi)
if self.nxi != self.nyi:
msg = 'CANNOT CREATE INSTANCE - The length of the input x and y coordindate grids must be equal'
raise ValueError(msg)
self.xi = xi
self.yi = yi
# ---- check the output grid argument list
try:
size = len(xo)
except:
msg = 'CANNOT CREATE INSTANCE - The second argument must be an array'
raise TypeError(msg)
try:
size = len(yo)
except:
msg = 'CANNOT CREATE INSTANCE - The fourth argument must be an array'
raise TypeError(msg)
# set the self data for the output grid
self.nxo = len(xo)
self.nyo = len(yo)
if listOutput == 'no':
self.xo, self.yo, monotonic, self.xreverse, self.yreverse = checkdim(xo, yo) # monotonicity check
if monotonic == 'no':
msg = 'CANNOT CREATE INSTANCE - Rectangular output grid must be monotonic'
raise ValueError(msg)
self.listOutput = 'no'
else:
if self.nxo != self.nyo:
msg = 'CANNOT CREATE INSTANCE - The list type output arrays must have the same length'
raise ValueError(msg)
else:
self.xo = xo
self.yo = yo
self.xreverse = 'no'
self.yreverse = 'no'
self.listOutput = 'yes'
# select the interpolation routines from the single or the double precision group - majority rules here
numberSingles = 0
numberDoubles = 0
if xi.dtype.char == 'f':
numberSingles = numberSingles + 1
else:
numberDoubles = numberDoubles + 1
if xo.dtype.char == 'f':
numberSingles = numberSingles + 1
else:
numberDoubles = numberDoubles + 1
if yi.dtype.char == 'f':
numberSingles = numberSingles + 1
else:
numberDoubles = numberDoubles + 1
if yo.dtype.char == 'f':
numberSingles = numberSingles + 1
else:
numberDoubles = numberDoubles + 1
if debug == 1:
print('number Singles and Doubles : ', numberSingles, numberDoubles)
if numberSingles >= numberDoubles:
self.group = 'single'
if numberSingles < 4:
sendmsg('Changing all the coordinate grid types to float32')
xi = xi.astype(numpy.float32)
xo = xo.astype(numpy.float32)
yi = yi.astype(numpy.float32)
yo = yo.astype(numpy.float32)
else:
self.group = 'double'
if numberDoubles < 4:
sendmsg('Changing all the coordinate grid types to float64')
xi = xi.astype(numpy.float64)
xo = xo.astype(numpy.float64)
yi = yi.astype(numpy.float64)
yo = yo.astype(numpy.float64)
# set the parameter instance data to the default values
defaultDict = Natgrid.makeDefaultParameterTable(self)
self.adf = eval(defaultDict['adf'][2])
self.alg = eval(defaultDict['alg'][2])
self.asc = eval(defaultDict['asc'][2])
self.bI = eval(defaultDict['bI'][2])
self.bJ = eval(defaultDict['bJ'][2])
self.dup = eval(defaultDict['dup'][2])
self.ext = eval(defaultDict['ext'][2])
self.hor = eval(defaultDict['hor'][2])
self.igr = eval(defaultDict['igr'][2])
self.magx = eval(defaultDict['magx'][2])
self.magy = eval(defaultDict['magy'][2])
self.magz = eval(defaultDict['magz'][2])
self.non = eval(defaultDict['non'][2])
self.nul = eval(defaultDict['nul'][2])
self.rad = eval(defaultDict['rad'][2])
self.sdi = eval(defaultDict['sdi'][2])
self.upd = eval(defaultDict['upd'][2])
self.ver = eval(defaultDict['ver'][2])
def rgrd(self, dataIn, aspectSlope = 'no', wrap = 'no'):
""" --------------------------------------------------------------------------------------------------------
routine: rgrd
purpose: Perform one of the following:
1. natural neighbor linear interpolation to a rectilinear grid
2. natural neighbor linear interpolation to a rectilinear grid returning aspects and slopes
3. natural neighbor linear interpolation to a list of points in the single point mode
4. natural neighbor nonlinear interpolation to a rectilinear grid
5. natural neighbor nonlinear interpolation to a rectilinear grid returning aspects and slopes
6. natural neighbor nonlinear interpolation to a list of points in the single point mode
Each of the computations can be single or double precison. The choice is made by examing the precision
in the grid coordinate arrays. In addition, the choice of the single point mode is determined by the
set of the listOuput parameter in creating an instance of the Natgrid class.
Assuming that the instance, r, has been constructed, the choice between a linear or a nonlinear
computation is made with the control parameter igr. The default calls for a linear calculation. To
call for a nonlinear one, type
r.igr = 1
usage: To interpolate the input data, dataIn, to the output data, dataOut, on the output grid, type
dataOut = r.rgrd(dataIn)
If the output grid is rectangular, it is possible to request the associated aspects and slopes with
dataOut, aspect, slope = r.rgrd(dataIn, aspectSlope = 'yes')
For global latitude-longitude grids, it is also possible to request a wrap in the input grid and the input
data in the longitude direction, assumed to be the yi grid coordinate, (with or without associated aspects
and slopes) with
dataOut, aspect, slope = r.rgrd(dataIn, wrap = 'yes')
or
dataOut, aspect, slope = r.rgrd(dataIn, aspectSlope = 'yes', wrap = 'yes')
definition: rgrd(self, dataIn, aspectSlope = 'no', wrap = 'no'):
--------------------------------------------------------------------------------------------------------"""
if self.nxi != len(dataIn):
msg = 'CANNOT CREATE INSTANCE - The length of the input coordindate grids and the data must be equal'
raise ValueError(msg)
if usefilled == 'yes':
dataIn = numpy.ma.filled(dataIn)
# set the instance values of the parameters in the c code
Natgrid.setInstanceParameters(self)
if wrap == 'yes':
self.xi, self.yi, dataIn = Natgrid.wrapAll(self, self.xi, self.yi, dataIn)
self.nxi = len(self.xi)
self.nyi = len(self.yi)
if dataIn.dtype.char == 'f': # single precision
if self.group == 'double': # change the grid type to match dataIn
self.group = 'single' # change the grid type to match dataIn
self.xi = self.xi.astype(numpy.float32)
self.xo = self.xo.astype(numpy.float32)
self.yi = self.yi.astype(numpy.float32)
self.yo = self.yo.astype(numpy.float32)
else: # double precision
if self.group == 'single': # change the grid type to match dataIn
self.group = 'double' # change the grid type to match dataIn
self.xi = self.xi.astype(numpy.float64)
self.xo = self.xo.astype(numpy.float64)
self.yi = self.yi.astype(numpy.float64)
self.yo = self.yo.astype(numpy.float64)
if self.listOutput == 'no': # output grid is rectangular
t = Natgrid.rgrdPrimary(self, dataIn, aspectSlope)
else: # output grid is a list
t = Natgrid.rgrdSinglePoint(self, dataIn)
return t
def rgrdPrimary(self, dataIn, aspectSlope):
""" #-------------------------------------------------------------------
#
#
#-------------------------------------------------------------------------"""
if aspectSlope != 'no':
self.sdi = 1 # calculate aspects and slopes
# set the instance values of the parameters in the c code
#Natgrid.setInstanceParameters(self)
if dataIn.dtype.char == 'f': # single precision
if debug == 1:
print('In rgrdPrimary calling natgrids')
dataOut, ier = natgridmodule.natgrids(self.nxi, self.xi, self.yi, dataIn, self.nxo, self.nyo, self.xo, self.yo)
if ier != 0:
msg = 'Error in return from natgrids call with -- ' + Natgrid.errorTable(self)[ier]
raise ValueError(msg)
if aspectSlope != 'no':
nxo = self.nxo
nyo = self.nyo
a = numpy.zeros((nxo, nyo), numpy.float32)
for i in range(nxo):
for j in range(nyo):
uvtemp, ier = natgridmodule.getaspects(i, j)
if ier != 0:
msg = 'Error in return from getaspects call with -- ' + Natgrid.errorTable(self)[ier]
raise ValueError(msg)
a[i,j] = uvtemp # return aspect in degrees
s = numpy.zeros((nxo, nyo), numpy.float32)
for i in range(nxo):
for j in range(nyo):
uvtemp, ier = natgridmodule.getslopes(i, j)
if ier != 0:
msg = 'Error in return from getslopes call with -- ' + Natgrid.errorTable(self)[ier]
raise ValueError(msg)
s[i,j] = uvtemp # return slope in degrees
else: # double precision
if debug == 1:
print('In rgrdPrimary calling natgridd')
dataOut, ier = natgridmodule.natgridd(self.nxi, self.xi, self.yi, dataIn, self.nxo, self.nyo, self.xo, self.yo)
if ier != 0:
msg = 'Error in return from natgridd call with -- ' + Natgrid.errorTable(self)[ier]
raise ValueError(msg)
if aspectSlope != 'no':
nxo = self.nxo
nyo = self.nyo
a = numpy.zeros((nxo, nyo), numpy.float64)
for i in range(nxo):
for j in range(nyo):
uvtemp, ier = natgridmodule.getsloped(i, j)
if ier != 0:
msg = 'Error in return from getaspectd call with -- ' + Natgrid.errorTable(self)[ier]
raise ValueError(msg)
a[i,j] = uvtemp # return aspect in degrees
s = numpy.zeros((nxo, nyo), numpy.float64)
for i in range(nxo):
for j in range(nyo):
s[i,j], ier = natgridmodule.getsloped(i, j)
if ier != 0:
msg = 'Error in return from getsloped call with -- ' + Natgrid.errorTable(self)[ier]
raise ValueError(msg)
s[i,j] = uvtemp # return slope in degrees
# is a reverse the order in the returned arrays necessary
if (self.xreverse == 'yes') or (self.yreverse == 'yes'):
needReverse = 'yes'
else:
needReverse = 'no'
# construct the tuple for the return of what was calculated
if aspectSlope != 'no':
if needReverse == 'yes':
dataOut = Natgrid.reverseData(self, dataOut)
a = Natgrid.reverseData(self, a)
s = Natgrid.reverseData(self, s)
returnList = [dataOut]
returnList.append(a)
returnList.append(s)
return tuple(returnList)
else:
if needReverse == 'yes':
dataOut = Natgrid.reverseData(self, dataOut)
return dataOut
def rgrdSinglePoint(self, dataIn):
""" #-------------------------------------------------------------------
#
#
#-------------------------------------------------------------------------"""
self.sdi = 0 # turn off calculaton of aspect and slope
if dataIn.dtype.char == 'f': # single precision
if debug == 1:
print('In rgrdSinglePoint using single precision computation')
natgridmodule.pntinits(self.nxi, self.xi, self.yi, dataIn)
dataOut = numpy.zeros((self.nxo), numpy.float32)
for i in range(self.nxo):
dataOut[i] = natgridmodule.pnts(self.xo[i], self.yo[i])
natgridmodule.pntend()
else: # double precision
if debug == 1:
print('In rgrdSinglePoint using double precision computation')
natgridmodule.pntinitd(self.nxi, self.xi, self.yi, dataIn)
dataOut = numpy.zeros((self.nxo), numpy.float64)
for i in range(self.nxo):
dataOut[i] = natgridmodule.pntd(self.xo[i], self.yo[i])
natgridmodule.pntendd()
return dataOut
def reverseData(self, data):
#------------------------------------------------------------------------------
#
# purpose: reverse the order of th data if outgrid submitted was not increasing
#
# usage:
#
# returned: parameters
#
#------------------------------------------------------------------------------
if self.xreverse == 'yes':
data = data[::-1,:]
if self.yreverse == 'yes':
data = data[:, ::-1]
return data
def wrapAll(self, lat, lon, data):
#------------------------------------------------------------------------------
#
# purpose: Adds much wrap in longitude to the linear form of the input data
#
# usage:
#
# passed: lat -- the latitude array
# lon -- the longitude arraywhich requires a large wrap for natgrid
# data -- the data at the associated linear set of points
#
# returned: lat, lon and data differing fom th input by the wrap
#
#
#------------------------------------------------------------------------------
if debug == 1:
print('entering wrapAll with array lengths: ', len(lat))
# Make a wrapped grid and wrapped data
lonList = list(lon) # make Python lists as intermediate step
latList = list(lat)
dataList = list(data)
maxlon = max(lonList) # set up the wrap ranges in longitude
minlon = min(lonList)
distance = (maxlon - minlon)/4. # wrap first and last quarter of points
minlonLow = minlon
minlonHigh = minlon + distance
maxlonLow = maxlon - distance
maxlonHigh = maxlon
for i in range(len(lonList)): # wrap the Python lists
value = lonList[i]
if (value >= minlonLow) and (value < minlonHigh):
lonList.append(value + 360.)
latList.append(latList[i])
dataList.append(dataList[i])
elif (value > maxlonLow) and (value <= maxlonHigh):
lonList.append(value - 360.)
latList.append(latList[i])
dataList.append(dataList[i])
if self.group == 'single': # single precision
lon = numpy.array(lonList, numpy.float32) # convert to numpy arrays
lat = numpy.array(latList, numpy.float32)
data = numpy.array(dataList, numpy.float32)
else: # double precision
lon = numpy.array(lonList, numpy.float64) # convert to numpy arrays
lat = numpy.array(latList, numpy.float64)
data = numpy.array(dataList, numpy.float64)
if debug == 1:
print('leaving wrapAll with array lengths: ', len(lat))
return lat, lon, data
#---------------------------------------------------------------------------------
# **************** Control parameter manipulation functions ********************
#---------------------------------------------------------------------------------
def parameterNames(self):
#------------------------------------------------------------------------------
#
# purpose: produce a list of the natgrid parameters
#
# usage: parameters = parameterNames(self)
#
# passed: self
#
# returned: parameters
#
#------------------------------------------------------------------------------
parameters = ['name', '----', 'adf', 'alg', 'asc', 'bI', 'bJ', 'dup', 'ext', 'hor', 'igr', 'magx',
'magy', 'magz', 'non', 'nul', 'rad', 'sdi', 'upd', 'ver', 'xas', 'yas', 'zas' ]
return parameters
def parameterType(self):
#--------------------------------------------------------------------------------
#
# purpose: produce a dictionary connecting parameter names and their data types
#
# usage: typeDict = parameterType(self)
#
# passed: self
#
# returned: typeDict
#
#---------------------------------------------------------------------------------
typeDict = {
'adf':'int', 'alg':'char', 'asc':'int', 'bI':'float', 'bJ':'float', 'dup':'int', 'ext':'int',
'hor':'float', 'igr':'int', 'magx':'float', 'magy':'float', 'magz':'float', 'non':'int', 'nul':'float',
'rad':'int', 'sdi':'int', 'upd':'int', 'ver':'float', 'xas':'float', 'yas':'float', 'zas':'float' }
return typeDict
def makeDefaultParameterTable(self):
#-----------------------------------------------------------------------------------
#
# purpose: construct the dictionary which is the default control parameters table
#
# usage: makeDefaultParameterTable()
#
# passed: self
#
# returned: parameterDict
#
#----------------------------------------------------------------------------------
parameterDict = {
'name':('type ', ' legal values ',' default values ',' description '),
'----':('-----', '--------------------','-----------------','------------------------------------------------------------'),
'adf': ('int ','0 = no or 1 = yes ',' 0 ','produce data file of algoritmic info for display? (see alg) '),
'alg': ('char ','any file name ',' "nnalg.dat" ','file name for algoritmic display tool (see adf) '),
'asc': ('int ','0 = no or 1 = yes ',' 1 ','is automatic scaling is allowed? '),
'bI': ('float','>= 1. ',' 1.5 ','tautness increasing effect of the gradients by increasing bI'),
'bJ': ('float','>= 1. ',' 7.0 ','tautness decreasing breadth of region affected by gradients '),
'dup': ('int ','0 = yes or 1 = no ',' 1 ','are duplicate input coordinates are allowed? '),
'ext': ('int ','0 = no or 1 = yes ',' 1 ','is extrapolation allowed outside the convex hull? '),
'hor': ('float','>= 0. ',' -1.0 ','amount of horizontal overlap from outside current region '),
'igr': ('int ','0 = no or 1 = yes ',' 0 ','are gradients are to be computed? '),
'magx':('float','> 0. ',' 1.0 ','scale factor for x coordinate values '),
'magy':('float','> 0. ',' 1.0 ','scale factor for y coordinate values '),
'magz':('float','> 0. ',' 1.0 ','scale factor for z coordinate values '),
'non': ('int ','0 = yes or 1 = no ',' 0 ','are interpolated values are allowed to be negative? '),
'nul': ('float','any float ',' 0.0 ','value for points outside the convex hull if no extrapolation'),
'rad': ('int ','0 = rad or 1 = deg ',' 0 ','are slopes and aspects are returned in radians or degrees? '),
'sdi': ('int ','0 = no or 1 = yes ',' 0 ','are slopes and aspects to be computed? '),
'upd': ('int ','0=N to S or 1=S to N',' 1 ','does output array from giving N to S or S to N? '),
'ver': ('float','>= 0. ',' -1.0 ','amount of vertical overlap from outside current region '),
'xas': ('float','> 0. ',' 0.0 ','scale used by automatic scaling of x in last interpolation '),
'yas': ('float','> 0. ',' 0.0 ','scale used by automatic scaling of y in last interpolation '),
'zas': ('float','> 0. ',' 0.0 ','scale used by automatic scaling of z in last interpolation ') }
return parameterDict
def makeInstanceParameterTable(self):
#----------------------------------------------------------------------------------
#
# purpose: construct the dictionary which is the instance control parameters table
#
# usage: makeInstanceParameterTable(self)
#
# passed: self
#
# returned: parameterDict
#
#----------------------------------------------------------------------------------
parameterDict = {
'name':('type ', ' legal values ',' Values ',' description '),
'----':('-----', '-------------------','----------------','------------------------------------------------------------'),
'adf': ('int ','0 = no or 1 = yes ', eval('self.adf') ,'produce data file of algoritmic info for display? (see alg) '),
'alg': ('char ','any file name ', eval('self.alg') ,'file name for algoritmic display tool (see adf) '),
'asc': ('int ','0 = no or 1 = yes ', eval('self.asc') ,'is automatic scaling is allowed? '),
'bI': ('float','>= 1. ', eval('self.bI') ,'tautness increasing effect of the gradients by increasing bI'),
'bJ': ('float','>= 1. ', eval('self.bJ') ,'tautness decreasing breadth of region affected by gradients '),
'dup': ('int ','0 = yes or 1 = no ', eval('self.dup') ,'are duplicate input coordinates are allowed? '),
'ext': ('int ','0 = no or 1 = yes ', eval('self.ext') ,'is extrapolation allowed outside the convex hull? '),
'hor': ('float','>= 0. ', eval('self.hor') ,'amount of horizontal overlap from outside current region '),
'igr': ('int ','0 = no or 1 = yes ', eval('self.igr') ,'are gradients are to be computed? '),
'magx':('float','> 0. ', eval('self.magx'),'scale factor for x coordinate values '),
'magy':('float','> 0. ', eval('self.magy'),'scale factor for y coordinate values '),
'magz':('float','> 0. ', eval('self.magz'),'scale factor for z coordinate values '),
'non': ('int ','0 = yes or 1 = no ', eval('self.non') ,'are interpolated values are allowed to be negative? '),
'nul': ('float','any float ', eval('self.nul') ,'value for points outside the convex hull if no extrapolation'),
'rad': ('int ','0 = rad or 1 = deg ', eval('self.rad') ,'are slopes and aspects are returned in radians or degrees? '),
'sdi': ('int ','0 = no or 1 = yes ', eval('self.sdi') ,'are slopes and aspects to be computed? '),
'upd': ('int ','0=N to S or 1=S to N', eval('self.upd') ,'does output array from giving N to S or S to N? '),
'ver': ('float','>= 0. ', eval('self.ver') ,'amount of vertical overlap from outside current region '),
'xas': ('float','> 0. ',' 0.0 ','scale used by automatic scaling of x in last interpolation'),
'yas': ('float','> 0. ',' 0.0 ','scale used by automatic scaling of y in last interpolation'),
'zas': ('float','> 0. ',' 0.0 ','scale used by automatic scaling of z in last interpolation') }
return parameterDict
def printDefaultParameterTable(self):
""" --------------------------------------------------------------------------------------------------------
purpose: print the value of all the parameters
usage: r.printDefaultParameterTable()
where r is an instance of Natgrid
passed: self
returned: None
--------------------------------------------------------------------------------------------------------"""
names = Natgrid.parameterNames(self)
names = names[2:]
parameterDict = Natgrid.makeDefaultParameterTable(self)
for item in names:
items = (item, parameterDict[item][0], parameterDict[item][1], parameterDict[item][2], parameterDict[item][3])
print('%-7.7s %-6.6s %-12.12s %-15.15s %s' % items)
return
def printInstanceParameterTable(self):
""" --------------------------------------------------------------------------------------------------------
purpose: print the value of all the parameters
usage: r.printInstanceParameterTable()
where r is an instance of Natgrid
passed: self
returned: None
--------------------------------------------------------------------------------------------------------"""
names = Natgrid.parameterNames(self)
names = names[2:]
parameterDict = Natgrid.makeInstanceParameterTable(self)
for item in names:
items = (item, parameterDict[item][0], parameterDict[item][1], parameterDict[item][2], parameterDict[item][3])
print('%-7.7s %-6.6s %-12.12s %-7.7s %s' % items)
return
def printInstanceParameters(self):
""" --------------------------------------------------------------------------------------------------------
purpose: print the values of the current natgrid control parameters in c code
usage: r. printInstanceParameters()
where r is an instance of Natgrid
passed: self
returned: None
--------------------------------------------------------------------------------------------------------"""
names = Natgrid.parameterNames(self)
names = names[2:]
typeDict = Natgrid.parameterType(self)
for name in names:
if typeDict[name] == 'int':
print('Currently, %s = %d' % (name, eval('self.' + name)))
elif typeDict[name] == 'char':
print('Currently, %s = %s' % (name, eval('self.' + name)))
elif typeDict[name] == 'float':
print('Currently, %s = %f' % (name, eval('self.' + name)))
elif typeDict[name] == 'double':
print('Currently, %s = %f' % (name, eval('self.' + name)))
return None
def setInstanceParameters(self):
#---------------------------------------------------------------------------
#
# purpose: set the instance values of the current natgrid control parameters in c code
#
# usage: r.setInstanceParameters()
#
# where r is an instance of Natgrid
#
# passed: self
#
# returned: None
#
#----------------------------------------------------------------------------
names = Natgrid.parameterNames(self)
names = names[2:-3] # the -3 eliminates the nonsettable xas, yas and zas
typeDict = Natgrid.parameterType(self)
# set the current values for the natgrid control parameters
for name in names:
if typeDict[name] == 'int':
natgridmodule.seti(name, eval('self.' + name))
elif typeDict[name] == 'char':
natgridmodule.setc(name, eval('self.' + name))
elif typeDict[name] == 'float':
natgridmodule.setr(name, eval('self.' + name))
elif typeDict[name] == 'double':
natgridmodule.setrd(name, eval('self.' + name))
return None
#---------------------------------------------------------------------------------
# ***************************** Error Table ************************************
#---------------------------------------------------------------------------------
def errorTable(self):
""" --------------------------------------------------------------------------------------------------------
purpose: construct the dictionary which provides access to error messages
usage: errorDict = r.errorTable()
where r is an instance of Natgrid
returned: errorDict
--------------------------------------------------------------------------------------------------------"""
errorDict = {
1: 'Insufficient data in gridded region to triangulate',
2: 'Dulpicate input data coordinates are not allowed',
3: 'Unable to open file for writing algorithmic',
4: 'WARNING: The ratio of vertical to horizontal scales too large for gradients. Rescale if gradients required',
5: 'WARNING: The ratio of vertical to horizontal scales too small for gradients. Rescale if gradients required',
6: 'WARNING: The ratio of x to y-axis breath too extreme. Change proportions or rescale. Gradients disabled',
7: 'Unable to allocate storage for ivector',
8: 'Unable to allocate storage for dvector',
9: 'Unable to allocate storage for **imatrix',
10: 'Unable to allocate storage for imatrix[]',
11: 'Unable to allocate storage for **fmatrix',
12: 'Unable to allocate storage for fmatrix[]',
13: 'Unable to allocate storage for **dmatrix',
14: 'Unable to allocate storage for dmatrix[]',
15: 'Unable to allocate storage for raw data',
16: 'Unable to allocate storage for a simplex',
17: 'Unable to allocate storage for temp',
18: 'Unable to allocate storage for neig',
19: 'Slopes have not been computed, set sdip',
20: 'Row argument out of range',
21: 'Column argument out of range',
22: 'Aspects have not been computed, set sdip',
23: 'Parameter name not known',
24: 'Can not open error file',
25: 'Automatic scaling done - distorted aspects not returned. Rescale data or set magx, magy and magz appropriately',
26: 'Automatic scaling done - distorted slopes not returned. Rescale data or set magx, magy and magz appropriately',
27: 'Coordinate is outside the gridded region for a single point interpolation',
28: 'Can not compute aspects and slopes in conjunction with single point interpolation mode',
29: 'Fortran DOUBLE PRECISION entries not supported on UNICOS',
30: 'Error number out of range' }
return errorDict
#---------------------------------------------------------------------------------
# *************************** magic functions *********************************
#---------------------------------------------------------------------------------
def __setattr__(self, name, value):
#---------------------------------------------------------------------------------
#
# purpose: '__setattr__' is called on every assignment to an instance attribute.
# Consequently, it must put the value in through the __dict__ to avoid
# calling itself and setting up an infinite recursion loop.It sets the
# attribute called name to value in two steps.
# One -- set the global C code control parameter
# Two -- set the instance self data control parameter
#
# usage: x.name = value
#
# passed : name and value
#
# returned: None
#
#---------------------------------------------------------------------------------
typeDict = Natgrid.parameterType(self)
if name in typeDict.keys():
if typeDict[name] == 'int':
natgridmodule.seti(name, value)
self.__dict__[name] = value
elif typeDict[name] == 'char':
natgridmodule.setc(name, value)
self.__dict__[name] = value
elif typeDict[name] == 'float':
natgridmodule.setr(name, value)
self.__dict__[name] = value
elif typeDict[name] == 'double':
natgridmodule.setrd(name, value)
self.__dict__[name] = value
else:
self.__dict__[name] = value
return None
def __getattr__(self, name):
#---------------------------------------------------------------------------------
#
# purpose: '__getattr__' is called only if a referenced attribute can not be found
# in the instance. It gets the attribute from natgridmodule if possible.
#
# usage: x.name -- name is the oject and not a string repr
#
# passed : name
#
# returned: x.name
#
#---------------------------------------------------------------------------------
typeDict = Natgrid.parameterType(self)
if name in typeDict.keys():
if typeDict[name] == 'int':
value = natgridmodule.geti(name)
elif typeDict[name] == 'char':
value = natgridmodule.getc(name)
elif typeDict[name] == 'float':
value = natgridmodule.getr(name)
elif typeDict[name] == 'double':
value = natgridmodule.getrd(name)
else:
raise AttributeError(name)
return value
#---------------------------------------------------------------------------------
# *******************************************************************
# **************** end of magic functions **************************
# *******************************************************************
#---------------------------------------------------------------------------------
def printParameterTable():
""" --------------------------------------------------------------------------------------------------------
routine: printParameterTable
purpose: print the control parameter table using the default values from outside the Natgrid class
usage: import nat
nat.printParameterTable()
passed: nothing
returned: None
definition: printParameterTable():
--------------------------------------------------------------------------------------------------------"""
names = ['name', '----', 'adf', 'alg', 'asc', 'bI', 'bJ', 'dup', 'ext', 'hor', 'igr', 'magx',
'magy', 'magz', 'non', 'nul', 'rad', 'sdi', 'upd', 'ver', 'xas', 'yas', 'zas' ]
parameterDict = {
'name':('type ', ' legal values ',' default values ',' description '),
'----':('-----', '--------------------','-----------------','------------------------------------------------------------'),
'adf': ('int ','0 = no or 1 = yes ',' 0 ','produce data file of algoritmic info for display? (see alg) '),
'alg': ('char ','any file name ',' "nnalg.dat" ','file name for algoritmic display tool (see adf) '),
'asc': ('int ','0 = no or 1 = yes ',' 1 ','is automatic scaling is allowed? '),
'bI': ('float','>= 1. ',' 1.5 ','tautness increasing effect of the gradients by increasing bI'),
'bJ': ('float','>= 1. ',' 7.0 ','tautness decreasing breadth of region affected by gradients '),
'dup': ('int ','0 = yes or 1 = no ',' 1 ','are duplicate input coordinates are allowed? '),
'ext': ('int ','0 = no or 1 = yes ',' 1 ','is extrapolation allowed outside the convex hull? '),
'hor': ('float','>= 0. ',' -1.0 ','amount of horizontal overlap from outside current region '),
'igr': ('int ','0 = no or 1 = yes ',' 0 ','are gradients are to be computed? '),
'magx':('float','> 0. ',' 1.0 ','scale factor for x coordinate values '),
'magy':('float','> 0. ',' 1.0 ','scale factor for y coordinate values '),
'magz':('float','> 0. ',' 1.0 ','scale factor for z coordinate values '),
'non': ('int ','0 = yes or 1 = no ',' 0 ','are interpolated values are allowed to be negative? '),
'nul': ('float','any float ',' 0.0 ','value for points outside the convex hull if no extrapolation'),
'rad': ('int ','0 = rad or 1 = deg ',' 0 ','are slopes and aspects are returned in radians or degrees? '),
'sdi': ('int ','0 = no or 1 = yes ',' 0 ','are slopes and aspects to be computed? '),
'upd': ('int ','0=N to S or 1=S to N',' 1 ','does output array from giving N to S or S to N? '),
'ver': ('float','>= 0. ',' -1.0 ','amount of vertical overlap from outside current region '),
'xas': ('float','> 0. ',' 0.0 ','scale used by automatic scaling of x in last interpolation '),
'yas': ('float','> 0. ',' 0.0 ','scale used by automatic scaling of y in last interpolation '),
'zas': ('float','> 0. ',' 0.0 ','scale used by automatic scaling of z in last interpolation ') }
for item in names:
items = (item, parameterDict[item][0], parameterDict[item][1], parameterDict[item][2], parameterDict[item][3])
print('%-7.7s %-6.6s %-12.12s %-15.15s %s' % items)
return
def printStoredParameters():
""" --------------------------------------------------------------------------------------------------------
routine: printStoredParameters
purpose: print the values of the current natgrid control parameters in c code. The call
to the method function rgrd will change them to the instance values.
usage: import nat
nat.printStoredParameters()
passed: nothing
returned: None
definition: printStoredParameters():
--------------------------------------------------------------------------------------------------------"""
names = ['name', '----', 'adf', 'alg', 'asc', 'bI', 'bJ', 'dup', 'ext', 'hor', 'igr', 'magx',
'magy', 'magz', 'non', 'nul', 'rad', 'sdi', 'upd', 'ver', 'xas', 'yas', 'zas' ]
names = names[2:]
typeDict = {
'adf':'int', 'alg':'char', 'asc':'int', 'bI':'float', 'bJ':'float', 'dup':'int', 'ext':'int',
'hor':'float', 'igr':'int', 'magx':'float', 'magy':'float', 'magz':'float', 'non':'int', 'nul':'float',
'rad':'int', 'sdi':'int', 'upd':'int', 'ver':'float', 'xas':'float', 'yas':'float', 'zas':'float' }
for item in names:
if typeDict[item] == 'int':
print(' %s = %d' % (item, natgridmodule.geti(item)))
elif typeDict[item] == 'char':
print(' %s = %s' % (item, natgridmodule.getc(item)))
elif typeDict[item] == 'float':
print(' %s = %f' % (item, natgridmodule.getr(item)))
elif typeDict[item] == 'double':
print(' %s = %f' % (item, natgridmodule.getrd(item)))
return None
def checkdim(x, y):
#------------------------------------------------------------------------------------------
#
# purpose: determine whether the coordinate grid is random or monotonically increasing
#
# usage:
#
# returned: x, y, monotonic, xreverse, yreverse
#
#-------------------------------------------------------------------------------------------
xsize = len(x)
if x[0] > x[xsize - 1]:
x = x[::-1]
xreverse = 'yes'
else:
xreverse = 'no'
xmonotonic = 'yes' # monotonic and possibly reversed to make it montonically increasing
for n in range(1, xsize):
if x[n] < x[n - 1]:
xmonotonic = 'no' # not monotonic so return the original grid
ysize = len(y)
if y[0] > y[ysize - 1]:
y = y[::-1]
yreverse = 'yes'
else:
yreverse = 'no'
ymonotonic = 'yes' # monotonic and possibly reversed to make it montonically increasing
for n in range(1, ysize):
if y[n] < y[n - 1]:
ymonotonic = 'no' # not monotonic so return the original grid
if xmonotonic == 'yes' and ymonotonic == 'yes': # if both are monotonic the grid is monotonic
monotonic = 'yes'
else:
monotonic = 'no'
if xreverse == 'yes': # return vectors to thier original state
x = x[::-1]
xreverse = 'no'
if yreverse == 'yes':
y = y[::-1]
yreverse = 'no'
# note that x and y may be returned reversed as necessary only if monotonic is set to yes
return x, y, monotonic, xreverse, yreverse
#---------------------------------------------------------------------------------
# ********************************************************************************
# ********************************************************************************
#---------------------------------------------------------------------------------
def sendOutput(output, msg, value = None):
""" #---------------------------------------------------------------------------------
#
# purpose: send the same message to the screen and to a file
#
# passed : msg - the string
#
# returned: return
#
#---------------------------------------------------------------------------------"""
if value is None:
print(msg)
output.write(msg + '\n')
else:
print(msg, repr(value))
output.write(msg + ' %15.11e\n' % (value,))
return None
def document():
""" #-------------------------------------------------------------------------
#
# purpose: 'docstrings' writes the doc strings contained in the regrid module
# to a file as documentation for the user
#
# usage: import regrid2 as regrid
# regrid.document()
#
# passed : nothing
#
# returned: nothing
#
#-------------------------------------------------------------------------"""
import nat
std = sys.stdout # save sys.stout to allow reassigning later
sys.stdout = open( 'natgrid.doc', 'w')
print('**********************************************************************************************\n')
print('**************************** Overview of the CDAT interface to natgrid ***********************\n')
print('**********************************************************************************************\n')
print(nat.__doc__)
print()
print()
print(' ******************** Instructions for use of the natgrids function **************************')
print(natgridmodule.natgrids.__doc__)
print()
print(' ******************** Instructions for use of the seti function **************************')
print(natgridmodule.seti.__doc__)
print()
print(' ******************** Instructions for use of the geti function **************************')
print(natgridmodule.geti.__doc__)
print()
print(' ******************** Instructions for use of the setr function **************************')
print(natgridmodule.setr.__doc__)
print()
print(' ******************** Instructions for use of the getr function **************************')
print(natgridmodule.getr.__doc__)
print()
print(' ******************** Instructions for use of the setc function **************************')
print(natgridmodule.setc.__doc__)
print()
print(' ******************** Instructions for use of the getc function **************************')
print(natgridmodule.getc.__doc__)
print()
print(' ******************** Instructions for use of the getaspects function **************************')
print(natgridmodule.getaspects.__doc__)
print()
print(' ******************** Instructions for use of the getslopes function **************************')
print(natgridmodule.getslopes.__doc__)
print()
print(' ******************** Instructions for use of the pntinits function **************************')
print(natgridmodule.pntinits.__doc__)
print()
print(' ******************** Instructions for use of the pnts function **************************')
print(natgridmodule.pnts.__doc__)
print()
print(' ******************** Instructions for use of the pntend function **************************')
print(natgridmodule.pntend.__doc__)
print()
print(' ******************** Instructions for use of the natgridd function **************************')
print(natgridmodule.natgridd.__doc__)
print()
print(' ******************** Instructions for use of the setrd function **************************')
print(natgridmodule.setrd.__doc__)
print()
print(' ******************** Instructions for use of the getrd function **************************')
print(natgridmodule.getrd.__doc__)
print()
print(' ******************** Instructions for use of the getaspectd function **************************')
print(natgridmodule.getaspectd.__doc__)
print()
print(' ******************** Instructions for use of the getsloped function **************************')
print(natgridmodule.getsloped.__doc__)
print()
print(' ******************** Instructions for use of the pntinitd function **************************')
print(natgridmodule.pntinitd.__doc__)
print()
print(' ******************** Instructions for use of the pntd function **************************')
print(natgridmodule.pntd.__doc__)
print()
print(' ******************** Instructions for use of the pntendd function **************************')
print(natgridmodule.pntendd.__doc__)
print()
sys.stdout = std
return None
def sendmsg(msg, value1 = None, value2 = None):
""" #---------------------------------------------------------------------------------
#
# purpose: send the same message to the screen
#
# passed : msg - the string
# value - the number associated with the string
#
# returned: return
#
#---------------------------------------------------------------------------------"""
print('*******************************************************************')
if value1 is None:
print(msg)
elif value2 is None:
print(msg, value1)
else:
print(msg, value1, value2)
print('*******************************************************************')
return None
def help(choice = None):
import nat
if choice is None: # get instructions for use of help
print(""" ----------------------------------------------------------------------------------------
INSTRUCTIONS ON USE THE OBJECT ORIENTED INTERFACE TO THE NATGRID PACKAGE FROM NGMATH
This module is built as one class, Natgrid, which sports a single method called rgrd.
To get instructions on making an instance of Natgrid, type
nat.help('Natgrid')
To get instructions on using the control parameters, type
nat.help('parameters')
To print the table describing the control parameters, type
nat.help('table')
To get instructions on performing a regridding, type
nat.help('regrid')
To get instructions on calculating slopes and aspects, type
nat.help('aspectSlope')
To get instructions using the single point computational mode, type
nat.help('singlePoint')
INSTRUCTIONS ON USE OF ORIGINAL NATGRID PACKAGE FROM NGMATH
This module is built as an interface to natgridmodule.so which exports the following functions:
Single precision procedures:
natgrids - primary function for gridding.
seti - set int parameter values.
geti - retrieve values for int parameters.
setr - set float parameter values.
getr - retrieve values for float parameters
setc - set char parameter values.
getc - retrieve values for char parameters.
getaspects - get aspect values, if calculated.
getslopes - get slope values, if calculated.
pntinits - initiate single point mode.
pnts - interpolate at a single point.
pntend _ terminate single point mode.
Double precision procedures:
natgridd - primary function for gridding.
setrd - set float parameter values.
getrd - retrieve values for float parameters
getaspectd - get aspect values, if calculated.
getsloped - get slope values, if calculated.
pntinitd - initiate single point mode.
pntd - interpolate at a single point.
pntendd _ terminate single point mode.
It is feasible to use these functions directly without this module. Information is available
through their docstrings. For example, to get the docstring for the routine natgrids, follow this
procedure at the Python prompt:
import natgridmodule
print natgridmodule.natgrids.__doc__
or simply type
nat.help('natgrids')
------------------------------------------------------------------------------------------------------""")
elif choice == 'Natgrid':
print(""" ----------------------------------------------------------------------------------------
To make an instance, r, type:
import nat
r = nat.Natgrid(xi, yi, xo, yo)
or
r = nat.Natgrid(xi, yi, xo, yo, listOutput = 'yes')
where xi, yi and xo, yo are the input and output grid coordinate arrays. The optional listOutput is
set to anything except 'no' if xo, yo are in list format as explained below.
The input grid must be organized in a list format always. The size of the xi array and the yi array are
necessarily equal. For example, if there are n randomly spaced input data points, there
are n values in xi and n values in yi.
There are two possible formats for the output grid. The output grid coordinate arrays may be a list like
the input array or it may be a rectangular grid. The choice between the two posibilities is made according
to requirements in subseqent calls to the method function. The first choice is required if the subsequent
call is to the single point mode interpolation. The list can have one or more points. Of course, the list
could describe a rectangular grid. For example, a rectangular grid with 10 x values and 20 y values can be
rewrtten in list form with 200 x value and 200 y values. However, this form requires calling the slower
single point interpolator. The second choice is most efficient for the basic interpolation to a rectangular
output grid. The output grid must be monotonic but need not be equally spced.
The grid coordinate arrays can be single precision (numpy.float32) or double precision (numpy.float64). The
decision on whether to call for a single or a double precision computation subsequently is made by looking at
the type of these arrays.
--------------------------------------------------------------------------------------------------------------------""")
elif choice == 'parameters':
print(""" ----------------------------------------------------------------------------------------
In the absence of an instance of the class Natgrid, a description of the control parameters can be found
by typing
import nat
nat.printParameterTable()
The control parameters are easily available within the class. First make an instance, r, type:
import nat
r = nat.Natgrid(xi, yi, xo, yo)
To change a setting type the new value. For example, to set igr to 1, type
r.igr = 1
To find an individual value, type the name. For example, to exam the value of hor, type
r.hor
To check the settings type
r.printInstanceParameterTable() -- prints the table with values and a description of the parameters
used in subsequent calls to the method function rgrd
or
r.printInstanceParameters() -- prints a list of the parameters values used in subsequent calls to the
the rgrd method
nat. printStoredParameters() -- prints the parameters in memory which may differ from the above if the
user has made more than one instance of the Natgrid class.
--------------------------------------------------------------------------------------------------------------------""")
elif choice == 'table':
printParameterTable()
#-----------------------------------------------------------------------------------------------------
elif choice == 'regrid':
print(""" ----------------------------------------------------------------------------------------
natgrid is restricted to two dimensions . Consequently, it is the user's responsibility to reduce the processing
of higher dimensional data to a sequence of calls using only two dimensional data. A description of the basic
natural neighbor linear interpolation and nonlinear interpolations follow.
Make an instance, r, with:
import nat
r = nat.Natgrid(xi, yi, xo, yo)
where the xo, yo grid is rectilinear as explained in the help choice 'Natgrid'.
r.igr = 1 -- in order to set up the computation for nonlinear interpolation. The default value
for igr calls for a linear interpolation.
Then call the primary interpolation computation to regrid the input data, dataIn, on the grid (xi, yi) to
the output data, dataOut, on the grid (xo, yo), with
dataOut = r.rgrd( dataIn )
When dealing with global data described on a latitude-longitude grid, it is also possible to request a wrap
in the input grid and the input data in the longitude direction, assumed to be the yi grid coordinate, with
dataOut = r.rgrd(dataIn, wrap = 'yes')
The computation is either single or double precision as determined by the precision submitted in making
the instance.
--------------------------------------------------------------------------------------------------------------------""")
elif choice == 'aspectSlope':
print(""" ----------------------------------------------------------------------------------------
natgrid is restricted to two dimensions . Consequently, it is the user's responsibility to reduce the processing
of higher dimensional data to a sequence of calls using only two dimensional data. A description of the basic
natural neighbor linear and nonlinear interpolations returning the aspect and the slope at the output grid
points follows.
First make an instance, r, with:
import nat
r = nat.Natgrid(xi, yi, xo, yo)
where the xo, yo grid is rectilinear as explained in the help choice 'Natgrid'.
r.igr = 1 -- in order to set up the computation for nonlinear interpolation. The default value
for igr calls for a linear interpolation.
Then call the primary interpolation computation to regrid the input data, dataIn, on the grid (xi, yi) to
the output data, dataOut, on the grid (xo, yo), while asking for the aspect and the slope on this output grid, with
dataOut, a, s = r.rgrd( dataIn, aspectSlope = 'yes' )
where a is the aspect, the direction of the steepest descent in degrees measured from 'north' and s is the
slope in degrees measured from the horizontal. Necessarily, these are arrays aligned with the rectilinear
output grid, xo, yo.
It is also possible to request a wrap in the input grid and the input data in the longitude direction, assumed
to be the yi grid coordinate, by adding a keyword as
dataOut, a, s = r.rgrd( dataIn, aspectSlope = 'yes', wrap = 'yes' )
The computation is either single or double precision as determined by the precision submitted in making
the instance.
--------------------------------------------------------------------------------------------------------------------""")
elif choice == 'singlePoint':
print(""" ----------------------------------------------------------------------------------------
natgrid is restricted to two dimensions . Consequently, it is the user's responsibility to reduce the processing
of higher dimensional data to a sequence of calls using only two dimensional data. A description of the single
point natural neighbor linear and nonlinear interpolations follows.
First make an instance, r, with:
import nat
r = nat.Natgrid(xi, yi, xo, yo, listOutput)
where the xo, yo output grid is in the list form (not a rectangular output grid) as explained
in the help choice 'Natgrid'.
r.igr = 1 -- in order to set up the computation for nonlinear interpolation. The default value
for igr calls for a linear interpolation.
Then call the single point mode interpolation computation to regrid the input data, dataIn, on the grid (xi, yi)
to the output data, dataOut, on the grid (xo, yo), type
dataOut = r.rgrd( dataIn )
The single point mode is slow but it provides a choice where the interpolation is to one or more points
rather than to a complete rectangular grid..
The computation is either single or double precision as determined by the precision submitted in making
the instance.
--------------------------------------------------------------------------------------------------------------------""")
elif choice == 'natgrids':
print(natgridmodule.natgrids.__doc__)
elif choice == 'seti':
print(natgridmodule.seti.__doc__)
elif choice == 'geti':
print(natgridmodule.geti.__doc__)
elif choice == 'setr':
print(natgridmodule.setr.__doc__)
elif choice == 'getr':
print(natgridmodule.getr.__doc__)
elif choice == 'setc':
print(natgridmodule.setc.__doc__)
elif choice == 'getc':
print(natgridmodule.getc.__doc__)
elif choice == 'getaspects':
print(natgridmodule.getaspects.__doc__)
elif choice == 'getslopes':
print(natgridmodule.getslopes.__doc__)
elif choice == 'pntinits':
print(natgridmodule.pntinits.__doc__)
elif choice == 'pnts':
print(natgridmodule.pnts.__doc__)
elif choice == 'pntend':
print(natgridmodule.pntend.__doc__)
elif choice == 'natgridd':
print(natgridmodule.natgridd.__doc__)
elif choice == 'setrd':
print(natgridmodule.setrd.__doc__)
elif choice == 'getrd':
print(natgridmodule.getrd.__doc__)
elif choice == 'getaspectd':
print(natgridmodule.getaspectd.__doc__)
elif choice == 'getsloped':
print(natgridmodule.getsloped.__doc__)
elif choice == 'pntinitd':
print(natgridmodule.pntinitd.__doc__)
elif choice == 'pntd':
print(natgridmodule.pntd.__doc__)
elif choice == 'pntendd':
print(natgridmodule.pntendd.__doc__)
else:
print('Your request is not in help. The help choices are: ')
print('Natgrid, parameters, table, regrid, aspectSlope, singlePoint, natgrids, seti, geti, setr, getr, setc, getc, getaspects, getslopes, pntinits, pnts, pntend, natgridd, setrd, getrd, getaspectd, getsloped, pntinitd, pntd, pntendd')
return None
|