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.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.13.
.TH PYBEL "1" "March 2020" "pybel 0.14.5" "User Commands"
.SH NAME
pybel \- Command line interface for PyBEL
.SH SYNOPSIS
.B pybel
[\fI\,OPTIONS\/\fR] \fI\,COMMAND \/\fR[\fI\,ARGS\/\fR]...
.SH DESCRIPTION
PyBEL is a pure Python package for parsing and handling biological
networks encoded in the Biological Expression Language (BEL) version
2. It also facilitates data interchange between common formats and
databases such as NetworkX, JSON, CSV, SIF, Cytoscape, CX, NDEx, SQL,
and Neo4J.
.SH OPTIONS
.TP
\fB\-\-version\fR
Show the version and exit.
.TP
\fB\-c\fR, \fB\-\-connection\fR TEXT
Database connection string. [default:
sqlite:////home/andreas/.pybel/pybel_0.14.0_cache.db]
.TP
\fB\-\-help\fR
Show this message and exit.
.SS "Commands:"
.TP
compile
Compile a BEL script to a graph.
.TP
insert
Insert a graph to the database.
.TP
machine
Get content from the INDRA machine and upload to BEL Commons.
.TP
manage
Manage the database.
.TP
neo
Upload to neo4j.
.TP
post
Upload a graph to BEL Commons.
.TP
serialize
Serialize a graph to various formats.
.TP
summarize
Summarize a graph.
.TP
warnings
List warnings from a graph.
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.
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