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#This file is part of Pybliographer
#
# Copyright (C) 1998-2004 Peter Schulte-Stracke
# Email : mail@schulte-stracke.de
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
#
#
try: _
except NameError:
def _ (str)\
: return str
import getpass, re, rfc822, string, time, types
from Pyblio import Autoload, Base, Fields, Iterator, Open, Types, Utils
login_name = getpass.getuser()
key_map = {
'AB' : ('abstract', ' '),
'AU' : ('author', ' '),
'CR' : ('citedref', ' ; '),
'C1' : ('authoraddress', ' ; '),
'DE' : ('keywords', ' '),
'ED' : ('editor', ' '),
'IS' : ('number', ' ; '),
'LA' : ('language', ' ; '),
'PA' : ('address', ' ; '),
'PD' : ('month', ' ; '),
'PU' : ('publisher', ' ; '),
'PY' : ('date', ' ; '),
'SE' : ('series', ' '),
'SN' : ('issn', ' ; '),
'SO' : ('journal', ' ; '),
'TI' : ('title', ' '),
'UT' : ('sourceid', ' ; '),
'VL' : ('volume', ' ; ')}
xheader = re.compile('^(\w\w|\w\w+:)( (.*))$')
header = re.compile('^(\w\w)( (.*))$')
contin = re.compile('^ (.*)$')
sporadic = re.compile('^isifile-(..)$')
field_map = None
def reverse_mapping(map):
remap = {}
for key in map.keys():
remap[map[key][0]] = key
return remap
output = None # set by
def output_write(key, text):
# A text is either a string or a list:
if type(text) == types.ListType:
output.write ('%2s %s\n' %(key, text[0]))
for t in text[1:]:
output.write (' %s\n' %(t))
elif str(text):
output.write ('%2s %s\n' % (key, Utils.format(
str (text), 70, 0, 3)))
pagenum = re.compile('(\d) p\.')
keywds = re.compile('(.*)\[ISI:\] *(.*);;(.*)')
class IsifileIterator(Iterator.Iterator):
''' This class exports two functions: first and next,
each of which returns an bibliographic entry from the input file.
In addition is saves extraneous text (pre- and postamble).'''
def __init__(self, file):
self.file = file
self.extraneous = []
self.isifileformat = None
self.isifileinfo = None
def first(self):
self.file.seek(0)
return self.next()
def next (self):
lines = {}
in_table = {}
file_notes, file_time, file_version, file_format = ('','','','')
while 1:
line = self.file.readline()
if line == '': return lines # what does that mean ??
head = xheader.match(line)
if not head :
pass
elif head.group(1) == 'Date:':
file_time = time.strftime(
"%Y-%m-%d %H:%M", rfc822.parsedate(head.group(2)))
elif head.group(1) == 'Notes:':
file_notes = string.strip(head.group(2))
elif head.group(1) == 'FN':
file_format = head.group(2)
elif head.group(1) == 'VR':
file_version = head.group(2)
elif len(head.group(1)) == 2 :
break
else :
pass
self.extraneous.append(line)
self.isifileformat = self.isifileformat or "Isifile format %s(%s)" % (
file_format, file_version)
self.isifileinfo = self.isifileinfo or "ISI %s (%s) %s" %(
file_time, file_notes, login_name)
while 1:
if line == 'ER':break
if head :
key = head.group(1)
if key == 'ER': break
val = head.group(3)
if lines.has_key(key):
lines[key].append(val)
else:
lines[key] = [val]
else:
cont = contin.match(line)
if cont :
val = cont.group(1)
lines[key].append(val)
else: break
line = self.file.readline()
if line == '': break # error situation
head = header.match (line)
key = 'PT'
if lines.has_key(key):
if string.strip(lines[key][0])[0] == 'J':
del lines [key]
else:
print 'Warning: Unknown type of entry (%s) -- may need editing.' %(
lines[key])
type = Types.get_entry ('article')
for key in ( 'AU', 'ED'):
if lines.has_key(key):
field = Types.get_field('author')
group = Fields.AuthorGroup()
for item in lines[key]:
if string.strip(item) =='[Anon]' :
auth = [item]
else:
name, firstn = string.split (item, ',')
auth = ["%s, " % name]
for i in string.strip (firstn):
auth.append ("%s. " % i)
group.append (Fields.Author("".join(auth)))
if key == 'AU':
in_table['author'] = group
elif key == 'ED':
in_table['editor'] = group
del lines[key]
key, key1, key2 = 'PG', 'BP', 'EP'
if lines.has_key(key1) and lines.has_key(key2):
if len(lines[key1]) == len(lines[key2]):
pages = []
for i in range(len(lines[key1])):
firstpg = lines[key1] [i]
lastpg = lines[key2] [i]
pages.append(('%s -- %s' % (firstpg, lastpg)))
in_table['pages'] = Fields.Text (string.join(pages, '; '))
del lines[key1]; del lines[key2]
else: print 'inconsistent BP, EP fields found'
if lines.has_key(key):
in_table['size'] = Fields.Text ('%s p.' %(lines[key][0]))
del lines[key]
key = 'PY'
if lines.has_key(key):
val = lines[key][0]
in_table['date'] = Fields.Date(val)
del lines[key]
key = 'ID'
if lines. has_key(key):
val = "[ISI:] %s ;;" %(string.lower(string.join(lines[key], ' ')))
if lines.has_key('DE'):
lines['DE'].append ('; ' + val)
else :
lines['DE'] = [val]
del lines[key]
# journal titles come in various forms
if lines.has_key ('SO'):
uc_title = ' '.join(lines['SO'])
in_table ['journal'] = Fields.Text (uc_title)
if lines.has_key('JI'):
uc_title = re.split(r"([- .,/]+)", uc_title)
ca_title = re.split(r"[- .,/]+", ' '.join(lines['JI']))
i , Title = 0, []
for word in uc_title:
Word = string.capitalize(word)
if word == ca_title [i]:
Title.append (word)
i += 1
elif Word.startswith(ca_title[i]):
Title.append(Word)
i += 1
else:
Title.append(string.lower(word))
del lines['JI']
in_table['journal'] = Fields.Text ("".join(Title))
del lines['SO']
for key in lines.keys():
mapped_key, joiner = key_map.get(
key, ('isifile-%s' %(key.lower()), ' ; '))
text_type = Types.get_field (mapped_key).type
in_table [mapped_key] = text_type (joiner.join(lines[key]))
return Base.Entry ( None, type, in_table)
class Isifile (Base.DataBase):
'''Read a Isifile format database from an URL.'''
id = 'Isifile'
properties = {
'change_id' : 0,
'change_type' : 0
}
def __init__ (self, url):
Base.DataBase.__init__ (self, url)
iter = iterator (url, 0)
entry = iter.first ()
self.preamble = iter.extraneous
while entry:
self.add (entry)
entry = iter.next ()
self.postamble = iter.extraneous
return
re_page = re.compile (r'\s*-+\s*')
def writer (iter, output_stream, preamble=None, postamble = None):
'''Write data given by an iterator, as well as an
optional pre- and postamble, onto an output stream.'''
remaining = {}
text = []
global field_map, output
output = output_stream
field_map = field_map or reverse_mapping(key_map)
if preamble: output.writelines(preamble)
output_write('FN', 'ISI Export Format')
output_write('VR', '1.0')
entry = iter.first()
while entry:
remaining = {}
remaining_extra = {}
for fld in entry.keys():
if field_map.has_key(fld):
remaining[fld] = field_map[fld]
else:
m = sporadic.match(fld)
if m:
remaining[fld] = string.upper(m.group(1))
else:
remaining [fld] = '%% * ' + fld + ' * '
remaining_extra [fld] = '%% * ' + fld + ' * '
if not entry.has_key('isifile-pt'):
output_write('PT','J')
if entry.has_key ('author'):
authors = []
for author in entry['author']:
initials = author.initials()
initials = re.sub('\. *','', initials)
authors.append( '%s, %s' % (author.last, initials))
del remaining ['author']
output_write('AU', authors)
fld = 'title'
if entry.has_key(fld):
output_write('TI',str(entry[fld]))
del remaining[fld]
fld = 'journal'
if entry.has_key(fld):
output_write('SO',string.upper(str(entry[fld])))
del remaining[fld]
fld = 'pages'
if entry.has_key (fld):
for pair in string.split (str(entry[fld]), ' ; '):
beginpg, endpg = re_page.split(pair)
output_write('BP', beginpg)
output_write('EP', endpg)
del remaining[fld]
fld = 'size'
if entry.has_key(fld) :
m = pagenum.match(str(entry[fld]))
if m :
output_write('PG', m.group(1))
del remaining[fld]
fld = 'month'
if entry.has_key(fld):
output_write('PD',string.upper(str(entry[fld])))
del remaining[fld]
fld = 'citedref'
if entry.has_key(fld):
output_write('CR',string.split(str(entry[fld]), ' ; '))
del remaining[fld]
fld = 'keywords'
if entry.has_key(fld):
val = str(entry[fld])
m = keywds.match (val)
if m:
output_write('ID', string.upper(m.group(2)))
val = m.group(1) + m.group(3)
output_write ('DE', val)
del remaining[fld]
for field in remaining.keys():
if remaining_extra.has_key (field): continue
output_write (remaining[field], entry [field])
for field in remaining_extra.keys():
output_write (remaining_extra [field], entry [field])
output.write('ER\n')
entry = iter.next()
if entry: output.write('\n')
if postamble: output.writelines(postamble)
def opener (url, check):
base = None
if (not check) or (url.url [2] [-4:] == '.isi'):
base = Isifile (url)
return base
def iterator (url, check):
''' This methods returns an iterator that will parse the
database on the fly (useful for merging or to parse broken
databases '''
if check and url.url [2] [-4:] != '.isi': return
return IsifileIterator (open (Open.url_to_local (url), 'r'))
Autoload.register ('format', 'Isifile', {'open': opener,
'write': writer,
'iter': iterator})
### Local Variables:
### Mode: python
### py-master-file : "ut_Isi.py"
### End:
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