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"""Profile the memory usage of a Python program"""
__version__ = '0.25'
_CMD_USAGE = "python -m memory_profiler script_file.py"
import time, sys, os, pdb
import warnings
import linecache
import inspect
import subprocess
# TODO: provide alternative when multprocessing is not available
try:
from multiprocessing import Process, Pipe
except ImportError:
from multiprocessing.dummy import Process, Pipe
try:
import psutil
def _get_memory(pid):
process = psutil.Process(pid)
try:
mem = float(process.get_memory_info()[0]) / (1024 ** 2)
except psutil.AccessDenied:
mem = -1
return mem
except ImportError:
warnings.warn("psutil module not found. memory_profiler will be slow")
if os.name == 'posix':
def _get_memory(pid):
# ..
# .. memory usage in MB ..
# .. this should work on both Mac and Linux ..
# .. subprocess.check_output appeared in 2.7, using Popen ..
# .. for backwards compatibility ..
out = subprocess.Popen(['ps', 'v', '-p', str(pid)],
stdout=subprocess.PIPE).communicate()[0].split(b'\n')
try:
vsz_index = out[0].split().index(b'RSS')
return float(out[1].split()[vsz_index]) / 1024
except:
return -1
else:
raise NotImplementedError('The psutil module is required for non-unix '
'platforms')
class Timer(Process):
"""
Fetch memory consumption from over a time interval
"""
def __init__(self, monitor_pid, interval, pipe, *args, **kw):
self.monitor_pid = monitor_pid
self.interval = interval
self.pipe = pipe
self.cont = True
super(Timer, self).__init__(*args, **kw)
def run(self):
m = _get_memory(self.monitor_pid)
timings = [m]
self.pipe.send(0) # we're ready
while not self.pipe.poll(self.interval):
m = _get_memory(self.monitor_pid)
timings.append(m)
self.pipe.send(timings)
def memory_usage(proc=-1, interval=0.0, timeout=None):
"""
Return the memory usage of a process or piece of code
Parameters
----------
proc : {int, string, tuple, subprocess.Popen}, optional
The process to monitor. Can be given by an integer/string
representing a PID, by a Popen object or by a tuple
representing a Python function. The tuple contains three
values (f, args, kw) and specifies to run the function
f(*args, **kw).
Set to -1 (default) for current process.
interval : float, optional
Interval at which measurements are collected.
timeout : float, optional
Maximum amount of time (in seconds) to wait before returning.
Returns
-------
mem_usage : list of floating-poing values
memory usage, in MB. It's length is always < timeout / interval
"""
ret = []
if timeout is not None:
max_iter = int(timeout / interval)
elif isinstance(proc, int):
# external process and no timeout
max_iter = 1
else:
# for a Python function wait until it finishes
max_iter = float('inf')
if hasattr(proc, '__call__'):
proc = (proc, (), {})
if isinstance(proc, (list, tuple)):
if len(proc) == 1:
f, args, kw = (proc[0], (), {})
elif len(proc) == 2:
f, args, kw = (proc[0], proc[1], {})
elif len(proc) == 3:
f, args, kw = (proc[0], proc[1], proc[2])
else:
raise ValueError
aspec = inspect.getargspec(f)
n_args = len(aspec.args)
if aspec.defaults is not None:
n_args -= len(aspec.defaults)
if n_args != len(args):
raise ValueError(
'Function expects %s value(s) but %s where given'
% (n_args, len(args)))
child_conn, parent_conn = Pipe() # this will store Timer's results
p = Timer(os.getpid(), interval, child_conn)
p.start()
parent_conn.recv() # wait until we start getting memory
f(*args, **kw)
parent_conn.send(0) # finish timing
ret = parent_conn.recv()
p.join(5 * interval)
elif isinstance(proc, subprocess.Popen):
# external process, launched from Python
while True:
ret.append(_get_memory(proc.pid))
time.sleep(interval)
if timeout is not None:
max_iter -= 1
if max_iter == 0:
break
if proc.poll() is not None:
break
else:
# external process
if proc == -1:
proc = os.getpid()
if max_iter == -1:
max_iter = 1
counter = 0
while counter < max_iter:
counter += 1
ret.append(_get_memory(proc))
time.sleep(interval)
return ret
# ..
# .. utility functions for line-by-line ..
def _find_script(script_name):
""" Find the script.
If the input is not a file, then $PATH will be searched.
"""
if os.path.isfile(script_name):
return script_name
path = os.getenv('PATH', os.defpath).split(os.pathsep)
for folder in path:
if folder == '':
continue
fn = os.path.join(folder, script_name)
if os.path.isfile(fn):
return fn
sys.stderr.write('Could not find script {0}\n'.format(script_name))
raise SystemExit(1)
class LineProfiler:
""" A profiler that records the amount of memory for each line """
def __init__(self, **kw):
self.functions = list()
self.code_map = {}
self.enable_count = 0
self.max_mem = kw.get('max_mem', None)
def __call__(self, func):
self.add_function(func)
f = self.wrap_function(func)
f.__module__ = func.__module__
f.__name__ = func.__name__
f.__doc__ = func.__doc__
f.__dict__.update(getattr(func, '__dict__', {}))
return f
def add_function(self, func):
""" Record line profiling information for the given Python function.
"""
try:
# func_code does not exist in Python3
code = func.__code__
except AttributeError:
import warnings
warnings.warn("Could not extract a code object for the object %r"
% (func,))
return
if code not in self.code_map:
self.code_map[code] = {}
self.functions.append(func)
def wrap_function(self, func):
""" Wrap a function to profile it.
"""
def f(*args, **kwds):
self.enable_by_count()
try:
result = func(*args, **kwds)
finally:
self.disable_by_count()
return result
return f
def run(self, cmd):
""" Profile a single executable statment in the main namespace.
"""
import __main__
main_dict = __main__.__dict__
return self.runctx(cmd, main_dict, main_dict)
def runctx(self, cmd, globals, locals):
""" Profile a single executable statement in the given namespaces.
"""
self.enable_by_count()
try:
exec(cmd, globals, locals)
finally:
self.disable_by_count()
return self
def runcall(self, func, *args, **kw):
""" Profile a single function call.
"""
# XXX where is this used ? can be removed ?
self.enable_by_count()
try:
return func(*args, **kw)
finally:
self.disable_by_count()
def enable_by_count(self):
""" Enable the profiler if it hasn't been enabled before.
"""
if self.enable_count == 0:
self.enable()
self.enable_count += 1
def disable_by_count(self):
""" Disable the profiler if the number of disable requests matches the
number of enable requests.
"""
if self.enable_count > 0:
self.enable_count -= 1
if self.enable_count == 0:
self.disable()
def trace_memory_usage(self, frame, event, arg):
"""Callback for sys.settrace"""
if event in ('line', 'return') and frame.f_code in self.code_map:
lineno = frame.f_lineno
if event == 'return':
lineno += 1
entry = self.code_map[frame.f_code].setdefault(lineno, [])
entry.append(_get_memory(os.getpid()))
return self.trace_memory_usage
def trace_max_mem(self, frame, event, arg):
# run into PDB as soon as memory is higher than MAX_MEM
if event in ('line', 'return') and frame.f_code in self.code_map:
c = _get_memory(os.getpid())
if c >= self.max_mem:
t = 'Current memory {0:.2f} MB exceeded the maximum '.format(c) + \
'of {0:.2f} MB\n'.format(self.max_mem)
sys.stdout.write(t)
sys.stdout.write('Stepping into the debugger \n')
frame.f_lineno -= 2
p = pdb.Pdb()
p.quitting = False
p.stopframe = frame
p.returnframe = None
p.stoplineno = frame.f_lineno - 3
p.botframe = None
return p.trace_dispatch
return self.trace_max_mem
def __enter__(self):
self.enable_by_count()
def __exit__(self, exc_type, exc_val, exc_tb):
self.disable_by_count()
def enable(self):
if self.max_mem is not None:
sys.settrace(self.trace_max_mem)
else:
sys.settrace(self.trace_memory_usage)
def disable(self):
self.last_time = {}
sys.settrace(None)
def show_results(prof, stream=None, precision=3):
if stream is None:
stream = sys.stdout
template = '{0:>6} {1:>12} {2:>12} {3:<}'
for code in prof.code_map:
lines = prof.code_map[code]
if not lines:
# .. measurements are empty ..
continue
filename = code.co_filename
if filename.endswith((".pyc", ".pyo")):
filename = filename[:-1]
stream.write('Filename: ' + filename + '\n\n')
if not os.path.exists(filename):
stream.write('ERROR: Could not find file ' + filename + '\n')
if filename.startswith("ipython-input") or filename.startswith("<ipython-input"):
print("NOTE: %mprun can only be used on functions defined in "
"physical files, and not in the IPython environment.")
continue
all_lines = linecache.getlines(filename)
sub_lines = inspect.getblock(all_lines[code.co_firstlineno - 1:])
linenos = range(code.co_firstlineno, code.co_firstlineno +
len(sub_lines))
lines_normalized = {}
header = template.format('Line #', 'Mem usage', 'Increment',
'Line Contents')
stream.write(header + '\n')
stream.write('=' * len(header) + '\n')
# move everything one frame up
keys = sorted(lines.keys())
k_old = keys[0] - 1
lines_normalized[keys[0] - 1] = lines[keys[0]]
for i in range(1, len(lines_normalized[keys[0] - 1])):
lines_normalized[keys[0] - 1][i] = -1.
k = keys.pop(0)
while keys:
lines_normalized[k] = lines[keys[0]]
for i in range(len(lines_normalized[k_old]),
len(lines_normalized[k])):
lines_normalized[k][i] = -1.
k_old = k
k = keys.pop(0)
first_line = sorted(lines_normalized.keys())[0]
mem_old = max(lines_normalized[first_line])
precision = int(precision)
template_mem = '{{0:{0}.{1}'.format(precision + 6, precision) + 'f} MB'
for i, l in enumerate(linenos):
mem = ''
inc = ''
if l in lines_normalized:
mem = max(lines_normalized[l])
inc = mem - mem_old
mem_old = mem
mem = template_mem.format(mem)
inc = template_mem.format(inc)
stream.write(template.format(l, mem, inc, sub_lines[i]))
stream.write('\n\n')
# A lprun-style %mprun magic for IPython.
def magic_mprun(self, parameter_s=''):
""" Execute a statement under the line-by-line memory profiler from the
memory_profilser module.
Usage:
%mprun -f func1 -f func2 <statement>
The given statement (which doesn't require quote marks) is run via the
LineProfiler. Profiling is enabled for the functions specified by the -f
options. The statistics will be shown side-by-side with the code through
the pager once the statement has completed.
Options:
-f <function>: LineProfiler only profiles functions and methods it is told
to profile. This option tells the profiler about these functions. Multiple
-f options may be used. The argument may be any expression that gives
a Python function or method object. However, one must be careful to avoid
spaces that may confuse the option parser. Additionally, functions defined
in the interpreter at the In[] prompt or via %run currently cannot be
displayed. Write these functions out to a separate file and import them.
One or more -f options are required to get any useful results.
-T <filename>: dump the text-formatted statistics with the code
side-by-side out to a text file.
-r: return the LineProfiler object after it has completed profiling.
"""
try:
from StringIO import StringIO
except ImportError: # Python 3.x
from io import StringIO
# Local imports to avoid hard dependency.
from distutils.version import LooseVersion
import IPython
ipython_version = LooseVersion(IPython.__version__)
if ipython_version < '0.11':
from IPython.genutils import page
from IPython.ipstruct import Struct
from IPython.ipapi import UsageError
else:
from IPython.core.page import page
from IPython.utils.ipstruct import Struct
from IPython.core.error import UsageError
# Escape quote markers.
opts_def = Struct(T=[''], f=[])
parameter_s = parameter_s.replace('"', r'\"').replace("'", r"\'")
opts, arg_str = self.parse_options(parameter_s, 'rf:T:', list_all=True)
opts.merge(opts_def)
global_ns = self.shell.user_global_ns
local_ns = self.shell.user_ns
# Get the requested functions.
funcs = []
for name in opts.f:
try:
funcs.append(eval(name, global_ns, local_ns))
except Exception as e:
raise UsageError('Could not find function %r.\n%s: %s' % (name,
e.__class__.__name__, e))
profile = LineProfiler()
for func in funcs:
profile(func)
# Add the profiler to the builtins for @profile.
try:
import builtins
except ImportError: # Python 3x
import __builtin__ as builtins
if 'profile' in builtins.__dict__:
had_profile = True
old_profile = builtins.__dict__['profile']
else:
had_profile = False
old_profile = None
builtins.__dict__['profile'] = profile
try:
try:
profile.runctx(arg_str, global_ns, local_ns)
message = ''
except SystemExit:
message = "*** SystemExit exception caught in code being profiled."
except KeyboardInterrupt:
message = ("*** KeyboardInterrupt exception caught in code being "
"profiled.")
finally:
if had_profile:
builtins.__dict__['profile'] = old_profile
# Trap text output.
stdout_trap = StringIO()
show_results(profile, stdout_trap)
output = stdout_trap.getvalue()
output = output.rstrip()
if ipython_version < '0.11':
page(output, screen_lines=self.shell.rc.screen_length)
else:
page(output)
print(message,)
text_file = opts.T[0]
if text_file:
with open(text_file, 'w') as pfile:
pfile.write(output)
print('\n*** Profile printout saved to text file %s. %s' % (text_file,
message))
return_value = None
if 'r' in opts:
return_value = profile
return return_value
def _func_exec(stmt, ns):
# helper for magic_memit, just a function proxy for the exec
# statement
exec(stmt, ns)
# a timeit-style %memit magic for IPython
def magic_memit(self, line=''):
"""Measure memory usage of a Python statement
Usage, in line mode:
%memit [-r<R>t<T>] statement
Options:
-r<R>: repeat the loop iteration <R> times and take the best result.
Default: 1
-t<T>: timeout after <T> seconds. Unused if `-i` is active. Default: None
Examples
--------
::
In [1]: import numpy as np
In [2]: %memit np.zeros(1e7)
maximum of 1: 76.402344 MB per loop
In [3]: %memit np.ones(1e6)
maximum of 1: 7.820312 MB per loop
In [4]: %memit -r 10 np.empty(1e8)
maximum of 10: 0.101562 MB per loop
In [5]: memit -t 3 while True: pass;
Subprocess timed out.
Subprocess timed out.
Subprocess timed out.
ERROR: all subprocesses exited unsuccessfully. Try again with the `-i`
option.
maximum of 1: -inf MB per loop
"""
opts, stmt = self.parse_options(line, 'r:t:i', posix=False, strict=False)
repeat = int(getattr(opts, 'r', 1))
if repeat < 1:
repeat = 1
timeout = int(getattr(opts, 't', 0))
if timeout <= 0:
timeout = None
mem_usage = []
for _ in range(repeat):
tmp = memory_usage((_func_exec, (stmt, self.shell.user_ns)), timeout=timeout)
mem_usage.extend(tmp)
if mem_usage:
print('maximum of %d: %f MB per loop' % (repeat, max(mem_usage)))
else:
print('ERROR: could not read memory usage, try with a lower interval or more iterations')
def load_ipython_extension(ip):
"""This is called to load the module as an IPython extension."""
ip.define_magic('mprun', magic_mprun)
ip.define_magic('memit', magic_memit)
def profile(func, stream=None):
"""
Decorator that will run the function and print a line-by-line profile
"""
def wrapper(*args, **kwargs):
prof = LineProfiler()
val = prof(func)(*args, **kwargs)
show_results(prof, stream=stream)
return val
return wrapper
if __name__ == '__main__':
from optparse import OptionParser
parser = OptionParser(usage=_CMD_USAGE, version=__version__)
parser.disable_interspersed_args()
parser.add_option("--pdb-mmem", dest="max_mem", metavar="MAXMEM",
type="float", action="store",
help="step into the debugger when memory exceeds MAXMEM")
parser.add_option('--precision', dest="precision", type="int",
action="store", default=3,
help="precision of memory output in number of significant digits")
if not sys.argv[1:]:
parser.print_help()
sys.exit(2)
(options, args) = parser.parse_args()
prof = LineProfiler(max_mem=options.max_mem)
__file__ = _find_script(args[0])
try:
if sys.version_info[0] < 3:
import __builtin__
__builtin__.__dict__['profile'] = prof
ns = locals()
ns['profile'] = prof # shadow the profile decorator defined above
execfile(__file__, ns, ns)
else:
import builtins
builtins.__dict__['profile'] = prof
ns = locals()
ns['profile'] = prof # shadow the profile decorator defined above
exec(compile(open(__file__).read(), __file__, 'exec'), ns,
globals())
finally:
show_results(prof, precision=options.precision)
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